1PGV | pdb_00001pgv

Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain

PDB DOI: https://doi.org/10.2210/pdb1PGV/pdb

Classification: PROTEIN BINDING
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-05-28 Released: 2003-06-10
Deposition Author(s): Symersky, J., Lu, S., Li, S., Chen, L., Meehan, E., Luo, M., Qiu, S., Bunzel, R.J., Luo, D., Arabashi, A., Nagy, L.A., Lin, G., Luan, W.C.-H., Carson, M., Gray, R., Huang, W., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.234 (Depositor), 0.232 (DCC)
R-Value Work:
0.209 (Depositor), 0.209 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain

Lu, S., Symersky, J., Li, S., Carson, M., Chen, L., Meehan, E., Luo, M.

(2004) Proteins 56: 384-386

PubMed: 15211521 Search on PubMed
DOI: https://doi.org/10.1002/prot.10597
Primary Citation Related Structures:
1PGV

Organizational Affiliation

Southeast Collaboratory for Structural Genomics, Center for Biophysical Science and Egineering, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.

Macromolecule Content

Total Structure Weight: 22.39 kDa
Atom Count: 1,474
Modeled Residue Count: 167
Deposited Residue Count: 197
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tropomodulin TMD-1	A	197	Caenorhabditis elegans	Mutation(s): 0
UniProt
Find proteins for O01479 (Caenorhabditis elegans) Explore O01479 Go to UniProtKB: O01479
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O01479
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.234 (Depositor), 0.232 (DCC)
R-Value Work: 0.209 (Depositor), 0.209 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.706	α = 90
b = 50.621	β = 90
c = 107.132	γ = 90

Software Package:

Software Name	Purpose
MAR345	data collection
HKL-2000	data reduction
AMoRE	phasing
ARP/wARP	model building
CNS	refinement
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2003-06-10

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2003-06-10
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2023-08-16
Changes: Data collection, Database references, Refinement description