1OU0

precorrin-8X methylmutase related protein

PDB DOI: https://doi.org/10.2210/pdb1OU0/pdb

Classification: ISOMERASE
Organism(s): Thermoplasma acidophilum DSM 1728
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2003-03-24 Released: 2003-10-07
Deposition Author(s): Cuff, M.E., Joachimiak, A., Korolev, S., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.235
R-Value Work: 0.202
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum.

Cuff, M.E., Miller, D.J., Korolev, S., Xu, X., Anderson, W.F., Edwards, A., Joachimiak, A., Savchenko, A.

(2004) Proteins 58: 751-754

PubMed: 15609338 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1002/prot.20022
Primary Citation of Related Structures:
1OU0

Organizational Affiliation

Biosciences Division, Structural Biology Center, Argonne National Laboratory, Argonne, Illinois 60439, USA.

Macromolecule Content

Total Structure Weight: 91.38 kDa
Atom Count: 6,434
Modelled Residue Count: 765
Deposited Residue Count: 828
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
precorrin-8X methylmutase related protein	A, B, C, D	207	Thermoplasma acidophilum DSM 1728	Mutation(s): 9 Gene Names: Ta0654 EC: 5.4.1.2
UniProt
Find proteins for Q9HKE7 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HKE7 Go to UniProtKB: Q9HKE7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9HKE7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.235
R-Value Work: 0.202
R-Value Observed: 0.203
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.45	α = 90
b = 86.82	β = 90
c = 120.9	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
d*TREK	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-10-07

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2003-10-07
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.