1NY9 | pdb_00001ny9

Antibiotic binding domain of a TipA-class multidrug resistance transcriptional regulator


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1NY9

This is version 1.4 of the entry. See complete history

Literature

Structural basis for antibiotic recognition by the TipA-class of multidrug-resistance transcriptional regulators

Kahmann, J.D.Sass, H.J.Allan, M.G.Seto, H.Thompson, C.J.Grzesiek, S.

(2003) EMBO J 22: 1824-1834

  • DOI: https://doi.org/10.1093/emboj/cdg181
  • Primary Citation Related Structures: 
    1NY9

  • PubMed Abstract: 

    The TipAL protein, a bacterial transcriptional regulator of the MerR family, is activated by numerous cyclic thiopeptide antibiotics. Its C-terminal drug-binding domain, TipAS, defines a subfamily of broadly distributed bacterial proteins including Mta, a central regulator of multidrug resistance in Bacillus subtilis. The structure of apo TipAS, solved by solution NMR [Brookhaven Protein Data Bank entry 1NY9], is composed of a globin-like alpha-helical fold with a deep surface cleft and an unfolded N-terminal region. Antibiotics bind within the cleft at a position that is close to the corresponding heme pocket in myo- and hemoglobin, and induce folding of the N-terminus. Thus the classical globin fold is well adapted not only for accommodating its canonical cofactors, heme and other tetrapyrroles, but also for the recognition of a variety of antibiotics where ligand binding leads to transcriptional activation and drug resistance.


  • Organizational Affiliation
    • Division of Structural Biology, Biozentrum der Universität Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 16.45 kDa 
  • Atom Count: 741 
  • Modeled Residue Count: 94 
  • Deposited Residue Count: 143 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcriptional activator tipA-S143Streptomyces lividansMutation(s): 0 
Gene Names: tipA
UniProt
Find proteins for P0A4T9 (Streptomyces lividans)
Explore P0A4T9 
Go to UniProtKB:  P0A4T9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A4T9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-04-15
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection