1NMI | pdb_00001nmi

Solution structure of the imidazole complex of iso-1 cytochrome c

PDB DOI: https://doi.org/10.2210/pdb1NMI/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-01-10 Released: 2003-02-04
Deposition Author(s): Yao, Y., Tong, Y., Liu, G., Wang, J., Zheng, J., Tang, W.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 1
Selection Criteria: structures with acceptable covalent geometry

wwPDB Validation 3D Report Full Report

Validation slider image for 1NMI

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the imidazole complex of iso-1 cytochrome c

Yao, Y., Tong, Y., Liu, G., Wang, J., Zheng, J., Tang, W.

To be published.

Macromolecule Content

Total Structure Weight: 12.76 kDa
Atom Count: 896
Modeled Residue Count: 108
Deposited Residue Count: 108
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c, iso-1	A	108	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P00044 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00044 Go to UniProtKB: P00044
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00044
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEC Query on HEC Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	HEME C C₃₄ H₃₄ Fe N₄ O₄ HXQIYSLZKNYNMH-LJNAALQVSA-N		Interactions Focus chain C [auth A]
IMD Query on IMD Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	IMIDAZOLE C₃ H₅ N₂ RAXXELZNTBOGNW-UHFFFAOYSA-O		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 1
Selection Criteria: structures with acceptable covalent geometry

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-02-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-02-04
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-02-23
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-11-20
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.