1MZH | pdb_00001mzh

QR15, an Aldolase

PDB DOI: https://doi.org/10.2210/pdb1MZH/pdb

Classification: structural genomics, Aldolase
Organism(s): Aquifex aeolicus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2002-10-07 Released: 2003-02-04
Deposition Author(s): Tan, A.Y., Smith, P.C., Shen, J., Xiao, R., Acton, T., Rost, B., Montelione, G., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.277 (Depositor), 0.283 (DCC)
R-Value Work:
0.223 (Depositor), 0.227 (DCC)
R-Value Observed:
0.223 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1MZH

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Aquifex Aeolicus Aldolase, Northeast Structural Genomics Consortium Target QR15

Tan, A.Y., Smith, P.C., Shen, J., Xiao, R., Acton, T., Rost, B., Montelione, G., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 50.12 kDa
Atom Count: 3,869
Modeled Residue Count: 446
Deposited Residue Count: 450
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Deoxyribose-phosphate aldolase	A, B	225	Aquifex aeolicus	Mutation(s): 0 EC: 4.1.2.4
UniProt
Find proteins for O66540 (Aquifex aeolicus (strain VF5)) Explore O66540 Go to UniProtKB: O66540
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O66540
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B] mmCIF format, chain C [auth B]	C [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.277 (Depositor), 0.283 (DCC)
R-Value Work: 0.223 (Depositor), 0.227 (DCC)
R-Value Observed: 0.223 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.139	α = 90
b = 123.458	β = 90
c = 151.822	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
MLPHARE	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-02-04

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2003-02-04
Type: Initial release
Version 1.1: 2008-04-28
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.