1MNX

The Solution Structure of the Loop E Region of the 5S rRNA from Spinach Chloroplasts.


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 65 
  • Conformers Submitted: 13 
  • Selection Criteria: structures with the least restraint violations,structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The Solution Structure of the Loop E Region of the 5S rRNA from Spinach Chloroplasts

Vallurupalli, P.Moore, P.B.

(2003) J Mol Biol 325: 843-856

  • DOI: https://doi.org/10.1016/s0022-2836(02)01270-6
  • Primary Citation of Related Structures:  
    1MNX

  • PubMed Abstract: 

    A structure has been obtained for the loop E region of the 5S rRNA from Spinacia oleracia chloroplast ribosomes using residual dipolar coupling data as well as NOE, J coupling and chemical shift information. Even though the loop E sequence of this chloroplast 5S rRNA differs from that of Escherichia coli loop E at approximately 40% of its positions, its conformation is remarkably similar to that of E.coli loop E. Consistent with this conclusion, ribosomal protein L25 from E.coli, which binds to the loop E region of both intact E.coli 5S rRNA and to oligonucleotides containing that sequence, also binds to the chloroplast-derived oligonucleotide discussed here.


  • Organizational Affiliation

    Department of Chemistry, Yale University, New Haven, CT 06520-8107, USA.


Macromolecules
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains LengthOrganismImage
Loop E from 5S rRNA42Spinacia oleracea
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 65 
  • Conformers Submitted: 13 
  • Selection Criteria: structures with the least restraint violations,structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-01-14
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2016-05-25
    Changes: Source and taxonomy
  • Version 1.4: 2024-05-01
    Changes: Data collection, Database references, Experimental preparation