1MID | pdb_00001mid

Non-specific lipid transfer protein 1 from barley in complex with L-alfa-lysophosphatidylcholine, Laudoyl

• PDB DOI: https://doi.org/10.2210/pdb1MID/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Hordeum vulgare
• Mutation(s): No 


• Deposited: 2002-08-23 Released: 2004-04-06 
• Deposition Author(s): Henriksen, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 
  0.212 (Depositor) 
• R-Value Work: 
  0.163 (Depositor), 0.180 (DCC) 

Starting Model: experimental

Literature

Binding of L-alfa-lysophosphatidylcholine, lauroyl in the hydrophobic channel of barley lipid transfer protein

Henriksen, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.03 kDa 
• Atom Count: 783 
• Modeled Residue Count: 91 
• Deposited Residue Count: 91 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
nonspecific lipid-transfer protein 1	A	91	Hordeum vulgare	Mutation(s): 0
UniProt
Find proteins for P07597 (Hordeum vulgare) Explore P07597  Go to UniProtKB:  P07597

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
LAP	B [auth A], C [auth A], D [auth A]	[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM C20 H43 N O7 P BWKILASWCLJPBO-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free:  0.212 (Depositor) 
• R-Value Work:  0.163 (Depositor), 0.180 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.296	α = 90
b = 26.992	β = 89.95
c = 37.615	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-04-06 
Deposition Author(s): Henriksen, A.

Revision History  

• Version 1.0: 2004-04-06
  Type: Initial release
  
• Version 1.1: 2008-03-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2024-11-20
  Changes: Structure summary