1LR1 | pdb_00001lr1

Solution Structure of the Oligomerization Domain of the Bacterial Chromatin-Structuring Protein H-NS


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations, structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

H-NS Oligomerization Domain Structure Reveals the Mechanism for High Order Self-association of the Intact Protein

Esposito, D.Petrovic, A.Harris, R.Ono, S.Eccleston, J.Mbabaali, A.Haq, I.Higgins, C.F.Hinton, J.C.Driscoll, P.C.Ladbury, J.E.

(2002) J Mol Biology 324: 841-850

  • DOI: https://doi.org/10.1016/s0022-2836(02)01141-5
  • Primary Citation Related Structures: 
    1LR1

  • PubMed Abstract: 

    H-NS plays a role in condensing DNA in the bacterial nucleoid. This 136 amino acid protein comprises two functional domains separated by a flexible linker. High order structures formed by the N-terminal oligomerization domain (residues 1-89) constitute the basis of a protein scaffold that binds DNA via the C-terminal domain. Deletion of residues 57-89 or 64-89 of the oligomerization domain precludes high order structure formation, yielding a discrete dimer. This dimerization event represents the initial event in the formation of high order structure. The dimers thus constitute the basic building block of the protein scaffold. The three-dimensional solution structure of one of these units (residues 1-57) has been determined. Activity of these structural units is demonstrated by a dominant negative effect on high order structure formation on addition to the full length protein. Truncated and site-directed mutant forms of the N-terminal domain of H-NS reveal how the dimeric unit self-associates in a head-to-tail manner and demonstrate the importance of secondary structure in this interaction to form high order structures. A model is presented for the structural basis for DNA packaging in bacterial cells.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.

Macromolecule Content 

  • Total Structure Weight: 14.04 kDa 
  • Atom Count: 922 
  • Modeled Residue Count: 114 
  • Deposited Residue Count: 122 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
dna-binding protein h-ns
A, B
61Escherichia coliMutation(s): 1 
Gene Names: hns
UniProt
Find proteins for P0ACF8 (Escherichia coli (strain K12))
Explore P0ACF8 
Go to UniProtKB:  P0ACF8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ACF8
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations, structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-01-14
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-10-27
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection