1JSX | pdb_00001jsx

Crystal Structure of the Escherichia coli Glucose-Inhibited Division Protein B (GidB)

PDB DOI: https://doi.org/10.2210/pdb1JSX/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2001-08-19 Released: 2002-05-08
Deposition Author(s): Romanowski, M.J., Bonanno, J.B., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.275 (Depositor), 0.276 (DCC)
R-Value Work:
0.240 (Depositor), 0.240 (DCC)
R-Value Observed:
0.240 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold.

Romanowski, M.J., Bonanno, J.B., Burley, S.K.

(2002) Proteins 47: 563-567

PubMed: 12001236 Search on PubMed
DOI: https://doi.org/10.1002/prot.10121
Primary Citation Related Structures:
1JSX

Organizational Affiliation

Laboratories of Molecular Biophysics, The Rockefeller University, New York, New York.

Macromolecule Content

Total Structure Weight: 23.46 kDa
Atom Count: 1,669
Modeled Residue Count: 193
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucose-inhibited division protein B	A	207	Escherichia coli	Mutation(s): 0 Gene Names: gidB EC: 2.1.1.170
UniProt
Find proteins for P0A6U5 (Escherichia coli (strain K12)) Explore P0A6U5 Go to UniProtKB: P0A6U5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A6U5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.275 (Depositor), 0.276 (DCC)
R-Value Work: 0.240 (Depositor), 0.240 (DCC)
R-Value Observed: 0.240 (Depositor)

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.914	α = 90
b = 53.914	β = 90
c = 150.592	γ = 90

Software Package:

Software Name	Purpose
MLPHARE	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2002-05-08

Deposition Author(s):

Romanowski, M.J.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2002-05-08
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Structure summary
Version 1.4: 2024-02-07
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.