1J3A | pdb_00001j3a

Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii

PDB DOI: https://doi.org/10.2210/pdb1J3A/pdb

Classification: RIBOSOME
Organism(s): Pyrococcus horikoshii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-01-21 Released: 2003-02-04
Deposition Author(s): Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.228 (Depositor)
R-Value Work:
0.209 (Depositor)
R-Value Observed:
0.209 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii

Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.

To be published.

Macromolecule Content

Total Structure Weight: 16.33 kDa
Atom Count: 1,148
Modeled Residue Count: 129
Deposited Residue Count: 142
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13P	A	142	Pyrococcus horikoshii	Mutation(s): 0 Gene Names: PH1634
UniProt
Find proteins for O59300 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59300 Go to UniProtKB: O59300
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O59300
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.228 (Depositor)
R-Value Work: 0.209 (Depositor)
R-Value Observed: 0.209 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.082	α = 90
b = 51.542	β = 90
c = 64.198	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SHARP	phasing
CNS	refinement
CCP4	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-02-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-02-04
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.