1HY2

MINIPROTEIN MP-1 COMPLEX WITH STREPTAVIDIN

• PDB DOI: https://doi.org/10.2210/pdb1HY2/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Streptomyces avidinii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2001-01-17 Released: 2003-06-17 
• Deposition Author(s): Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.258 
• R-Value Work: 0.214 

Starting Model: experimental

Literature

Conformational Ensemble Analysis of Ligand Binding in Streptavidin Mini-Protein Complexes

Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Hetero 8-mer - A4B4 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 8-mer - A4B1C1D1E1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 58.61 kDa 
• Atom Count: 4,252 
• Modelled Residue Count: 540 
• Deposited Residue Count: 564 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
STREPTAVIDIN	A, B, C, D	129	Streptomyces avidinii	Mutation(s): 0
UniProt
Find proteins for P22629 (Streptomyces avidinii) Explore P22629  Go to UniProtKB:  P22629

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MP-1	E, F, G, H	12	N/A	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.258 
• R-Value Work: 0.214 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.633	α = 90
b = 81.364	β = 105.04
c = 83.307	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
CNS	refinement
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-06-17 
Deposition Author(s): Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

Revision History  

• Version 1.0: 2003-06-17
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-09
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-10-30
  Changes: Structure summary