1GKN | pdb_00001gkn

Structure Determination and Rational Mutagenesis reveal binding surface of immune adherence receptor, CR1 (CD35)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 120 
  • Conformers Submitted: 24 
  • Selection Criteria: LOWEST ENERGY 

wwPDB Validation 3D Report Full Report

Validation slider image for 1GKN

This is version 1.3 of the entry. See complete history

Literature

Structure of the C3B Binding Site of Cr1 (Cd35), the Immune Adherence Receptor

Smith, B.O.Mallin, R.L.Krych-Goldberg, M.Wang, X.Hauhart, R.E.Bromek, K.Uhrin, D.Atkinson, J.P.Barlow, P.N.

(2002) Cell 108: 769

  • DOI: https://doi.org/10.1016/s0092-8674(02)00672-4
  • Primary Citation Related Structures: 
    1GKG, 1GKN

  • PubMed Abstract: 

    Complement receptor type 1 (CR1 or CD35) is a multiple modular protein that mediates the immune adherence phenomenon, a fundamental event for destroying microbes and initiating an immunological response. It fulfills this role through binding C3b/C4b-opsonized foreign antigens. The structure of the principal C3b/C4b binding site (residues 901-1095) of CR1 is reported, revealing three complement control protein modules (modules 15-17) in an extended head-to-tail arrangement with flexibility at the 16-17 junction. Structure-guided mutagenesis identified a positively charged surface region on module 15 that is critical for C4b binding. This patch, together with basic side chains of module 16 exposed on the same face of CR1, is required for C3b binding. These studies reveal the initial structural details of one of the first receptor-ligand interactions to be identified in immunobiology.


  • Organizational Affiliation
    • Edinburgh Protein Interaction Centre, Joseph Black Chemistry Building, University of Edinburgh, West Mains Road, Edinburgh EH9 3JR, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 14.21 kDa 
  • Atom Count: 994 
  • Modeled Residue Count: 128 
  • Deposited Residue Count: 128 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
COMPLEMENT RECEPTOR TYPE 1128Homo sapiensMutation(s): 2 
UniProt & NIH Common Fund Data Resources
Find proteins for P17927 (Homo sapiens)
Explore P17927 
Go to UniProtKB:  P17927
PHAROS:  P17927
GTEx:  ENSG00000203710 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17927
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 120 
  • Conformers Submitted: 24 
  • Selection Criteria: LOWEST ENERGY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-04-18
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-10-23
    Changes: Data collection, Database references, Structure summary