1FYI | pdb_00001fyi

11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;

• PDB DOI: https://doi.org/10.2210/pdb1FYI/pdb
• NAKB: 1FYI
• BMRB: 4646

• Classification: DNA
• Mutation(s): No 


• Deposited: 2000-09-30 Released: 2000-10-18 
• Deposition Author(s): Smirnov, S., Johnson, F., de los Santos, C.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 15 
• Conformers Submitted: 9 
• Selection Criteria: target function 

Literature

Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY

Smirnov, S., Johnson, F., de los Santos, C.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 6.75 kDa 
• Atom Count: 448 
• Modeled Residue Count: 22 
• Deposited Residue Count: 22 
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3'	A	11	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3'	B	11	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 15 
• Conformers Submitted: 9 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2000-10-18 
Deposition Author(s): Smirnov, S., Johnson, F., de los Santos, C.

Revision History  

• Version 1.0: 2000-10-18
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection