1FVN | pdb_00001fvn

[ALA31, AIB32]-NEUROPEPTIDE Y


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1FVN

This is version 1.3 of the entry. See complete history

Literature

The first selective agonist for the neuropeptide YY5 receptor increases food intake in rats.

Cabrele, C.Langer, M.Bader, R.Wieland, H.A.Doods, H.N.Zerbe, O.Beck-Sickinger, A.G.

(2000) J Biological Chem 275: 36043-36048

  • DOI: https://doi.org/10.1074/jbc.M000626200
  • Primary Citation Related Structures: 
    1FVN

  • PubMed Abstract: 

    The first Y(5) receptor-selective analog of neuropeptide Y (NPY), [Ala(31),Aib(32)]NPY, has been developed and biologically characterized. Using competition binding assays on cell lines that express different Y receptors, we determined the affinity of this analog to be 6 nm at the human Y(5) receptor, >500 nm at the Y(1) and Y(2) receptors, and >1000 nm at the Y(4) receptor. Activity studies performed in vitro using a cAMP enzyme immunoassay, and in vivo using food intake studies in rats, showed that the peptide acted as an agonist. Further peptides obtained by the combination of the Ala(31)-Aib(32) motif with chimeric peptides containing segments of NPY and pancreatic polypeptide displayed the same selectivity and even higher affinity (up to 0.2 nm) for the Y(5) receptor. In vivo administration of the new Y(5) receptor-selective agonists significantly stimulated feeding in rats. The NMR solution structures of NPY and [Ala(31),Aib(32)]NPY showed a different conformation in the C-terminal region, where the alpha-helix of NPY was substituted by a more flexible, 3(10)-helical turn structure.


  • Organizational Affiliation
    • Department of Applied Biosciences, Federal Institute of Technology of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 4.2 kDa 
  • Atom Count: 298 
  • Modeled Residue Count: 37 
  • Deposited Residue Count: 37 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
NEUROPEPTIDE Y37N/AMutation(s): 2 
UniProt
Find proteins for P01304 (Sus scrofa)
Explore P01304 
Go to UniProtKB:  P01304
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01304
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
AIB
Query on AIB
A
L-PEPTIDE LINKINGC4 H9 N O2ALA

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-10-04
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-11-03
    Changes: Data collection, Database references, Derived calculations