1F36 | pdb_00001f36

THE CRYSTAL STRUCTURE OF FIS MUTANT K36E REVEALS THAT THE TRANSACTIVATION REGION OF THE FIS PROTEIN CONTAINS EXTENDED MOBILE BETA-HAIRPIN ARMS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 
    0.277 (Depositor), 0.274 (DCC) 
  • R-Value Work: 
    0.222 (Depositor), 0.212 (DCC) 
  • R-Value Observed: 
    0.222 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history

Literature

The transactivation region of the fis protein that controls site-specific DNA inversion contains extended mobile beta-hairpin arms.

Safo, M.K.Yang, W.Z.Corselli, L.Cramton, S.E.Yuan, H.S.Johnson, R.C.

(1997) EMBO J 16: 6860-6873

  • DOI: https://doi.org/10.1093/emboj/16.22.6860
  • Primary Citation Related Structures: 
    1F36

  • PubMed Abstract: 

    The Fis protein regulates site-specific DNA inversion catalyzed by a family of DNA invertases when bound to a cis-acting recombinational enhancer. As is often found for transactivation domains, previous crystal structures have failed to resolve the conformation of the N-terminal inversion activation region within the Fis dimer. A new crystal form of a mutant Fis protein now reveals that the activation region contains two beta-hairpin arms that protrude over 20 A from the protein core. Saturation mutagenesis identified the regulatory and structurally important amino acids. The most critical activating residues are located near the tips of the beta-arms. Disulfide cross-linking between the beta-arms demonstrated that they are highly flexible in solution and that efficient inversion activation can occur when the beta-arms are covalently linked together. The emerging picture for this regulatory motif is that contacts with the recombinase at the tip of the mobile beta-arms activate the DNA invertase in the context of an invertasome complex.


  • Organizational Affiliation
    • Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan 11529, Republic of China.

Macromolecule Content 

  • Total Structure Weight: 22.51 kDa 
  • Atom Count: 1,438 
  • Modeled Residue Count: 178 
  • Deposited Residue Count: 196 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FIS
A, B
98Escherichia coliMutation(s): 1 
Gene Names: FIS
UniProt
Find proteins for P0A6R3 (Escherichia coli (strain K12))
Explore P0A6R3 
Go to UniProtKB:  P0A6R3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6R3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free:  0.277 (Depositor), 0.274 (DCC) 
  • R-Value Work:  0.222 (Depositor), 0.212 (DCC) 
  • R-Value Observed: 0.222 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.9α = 90
b = 51.9β = 90
c = 294.93γ = 120
Software Package:
Software NamePurpose
AMoREphasing
X-PLORrefinement
MSCdata reduction
MSCdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-12-24
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-11-03
    Changes: Database references
  • Version 1.4: 2024-02-07
    Changes: Data collection
  • Version 1.5: 2024-04-03
    Changes: Refinement description