1EW3 | pdb_00001ew3

CRYSTAL STRUCTURE OF THE MAJOR HORSE ALLERGEN EQU C 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.252 (Depositor) 
  • R-Value Work: 
    0.195 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the allergen Equ c 1. A dimeric lipocalin with restricted IgE-reactive epitopes.

Lascombe, M.B.Gregoire, C.Poncet, P.Tavares, G.A.Rosinski-Chupin, I.Rabillon, J.Goubran-Botros, H.Mazie, J.C.David, B.Alzari, P.M.

(2000) J Biological Chem 275: 21572-21577

  • DOI: https://doi.org/10.1074/jbc.M002854200
  • Primary Citation Related Structures: 
    1EW3

  • PubMed Abstract: 

    The three-dimensional structure of the major horse allergen Equ c 1 has been determined at 2.3 A resolution by x-ray crystallography. Equ c 1 displays the typical fold of lipocalins, a beta-barrel flanked by a C-terminal alpha-helix. The space between the two beta-sheets of the barrel defines an internal cavity that could serve, as in other lipocalins, for the binding and transport of small hydrophobic ligands. Equ c 1 crystallizes in a novel dimeric form, which is distinct from that observed in other lipocalin dimers and corresponds to the functional form of the allergen. Binding studies of point mutants of the allergen with specific monoclonal antibodies raised in mouse and IgE serum from horse allergic patients allowed to identify putative B cell antigenic determinants. In addition, total inhibition of IgE serum recognition by a single specific monoclonal antibody revealed the restricted nature of the IgE binding target on the molecular surface of Equ c 1.


  • Organizational Affiliation
    • Unité de Biochimie Structurale (CNRS URA 2185), Unité d'Immuno-Allergie, 25 et 28 rue du Docteur Roux, 75724 Paris Cedex 15, France.

Macromolecule Content 

  • Total Structure Weight: 18.75 kDa 
  • Atom Count: 1,396 
  • Modeled Residue Count: 159 
  • Deposited Residue Count: 159 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ALLERGEN EQU C 1159Equus caballusMutation(s): 0 
UniProt
Find proteins for Q95182 (Equus caballus)
Explore Q95182 
Go to UniProtKB:  Q95182
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ95182
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.252 (Depositor) 
  • R-Value Work:  0.195 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.04α = 90
b = 84.04β = 90
c = 58.48γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2000-05-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Structure summary