1DVW | pdb_00001dvw

NMR structure of 18 residue peptide from merp protein

PDB DOI: https://doi.org/10.2210/pdb1DVW/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Shigella flexneri
Mutation(s): No

Deposited: 2000-01-22 Released: 2003-12-23
Deposition Author(s): Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 1DVW

This is version 1.4 of the entry. See complete history.

Literature

The Structure of the Metal-Binding Motif GMTCAAC Is Similar in an 18-Residue Linear Peptide and the Mercury Binding Protein MerP

Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

(2000) J Am Chem Soc 122: 2389-2390

DOI: https://doi.org/10.1021/ja992908z

Macromolecule Content

Total Structure Weight: 2.01 kDa
Atom Count: 124
Modeled Residue Count: 18
Deposited Residue Count: 18
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
18 RESIDUE PEPTIDE FROM MERP PROTEIN	A	18	N/A	Mutation(s): 0
UniProt
Find proteins for P04129 (Shigella flexneri) Explore P04129 Go to UniProtKB: P04129
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04129
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HG Query on HG Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MERCURY (II) ION Hg BQPIGGFYSBELGY-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-12-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-12-23
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-02-16
Changes: Database references, Derived calculations
Version 1.4: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.