1DP3

SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN

• PDB DOI: https://doi.org/10.2210/pdb1DP3/pdb
• BMRB: 4584

• Classification: DNA BINDING PROTEIN
• Organism(s): Escherichia coli
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1999-12-23 Released: 2001-04-04 
• Deposition Author(s): Stockner, T., Plugariu, C., Koraimann, G., Hoegenauer, G., Bermel, W., Prytulla, S., Sterk, H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with acceptable covalent geometry 

Literature

Solution structure of the DNA-binding domain of TraM.

Stockner, T., Plugariu, C., Koraimann, G., Hogenauer, G., Bermel, W., Prytulla, S., Sterk, H.

(2001) Biochemistry 40: 3370-3377

• PubMed: 11258958 
• DOI: https://doi.org/10.1021/bi002031c
• Primary Citation of Related Structures:  
  1DP3


• PubMed Abstract: 
  

  The solution structure of the DNA-binding domain of the TraM protein, an essential component of the DNA transfer machinery of the conjugative resistance plasmid R1, is presented. The structure has been determined using homonuclear 2-dimensional NMR spectroscopy as well as 15N labeled heteronuclear 2- and 3-dimensional NMR spectroscopy. It turns out that the solution structure of the DNA binding domain of the TraM protein is globular and dominantly helical. The very first amino acids of the N-terminus are unstructured.

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Organizational Affiliation: 

Institute of Chemistry, Karl Franzens University Graz, Heinrichstrasse 28, A-8010 Graz, Austria.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.29 kDa 
• Atom Count: 440 
• Modelled Residue Count: 55 
• Deposited Residue Count: 55 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TRAM PROTEIN	A	55	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P07294 (Escherichia coli) Explore P07294  Go to UniProtKB:  P07294

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with acceptable covalent geometry 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2001-04-04 
Deposition Author(s): Stockner, T., Plugariu, C., Koraimann, G., Hoegenauer, G., Bermel, W., Prytulla, S., Sterk, H.

Revision History  

• Version 1.0: 2001-04-04
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Data collection, Database references, Derived calculations