1DM9 | pdb_00001dm9

HEAT SHOCK PROTEIN 15 KD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.286 (Depositor) 
  • R-Value Work: 
    0.226 (Depositor) 
  • R-Value Observed: 
    0.226 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1DM9

This is version 1.4 of the entry. See complete history

Literature

Structure of Hsp15 reveals a novel RNA-binding motif.

Staker, B.L.Korber, P.Bardwell, J.C.Saper, M.A.

(2000) EMBO J 19: 749-757

  • DOI: https://doi.org/10.1093/emboj/19.4.749
  • Primary Citation Related Structures: 
    1DM9

  • PubMed Abstract: 

    We have solved the crystal structure of the heat shock protein Hsp15, a newly isolated and very highly inducible heat shock protein that binds the ribosome. Comparison of its structure with those of two RNA-binding proteins, ribosomal protein S4 and threonyl-tRNA synthetase, reveals a novel RNA-binding motif. This newly recognized motif is remarkably common, present in at least eight different protein families that bind RNA. The motif's surface is populated by conserved, charged residues that define a likely RNA-binding site. An intriguing pattern emerges: stress proteins, ribosomal proteins and tRNA synthetases repeatedly share a conserved motif. This may imply a hitherto unrecognized functional similarity between these three protein classes.


  • Organizational Affiliation
    • Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.

Macromolecule Content 

  • Total Structure Weight: 31.63 kDa 
  • Atom Count: 1,806 
  • Modeled Residue Count: 211 
  • Deposited Residue Count: 266 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HYPOTHETICAL 15.5 KD PROTEIN IN MRCA-PCKA INTERGENIC REGION
A, B
133Escherichia coliMutation(s): 0 
UniProt
Find proteins for P0ACG8 (Escherichia coli (strain K12))
Explore P0ACG8 
Go to UniProtKB:  P0ACG8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ACG8
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.286 (Depositor) 
  • R-Value Work:  0.226 (Depositor) 
  • R-Value Observed: 0.226 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.07α = 90
b = 67.93β = 90
c = 41.01γ = 90
Software Package:
Software NamePurpose
MLPHAREphasing
CNSrefinement
bioteXdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-02-18
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description
  • Version 1.4: 2024-02-07
    Changes: Data collection, Database references, Derived calculations