1BYL

BLEOMYCIN RESISTANCE PROTEIN FROM STREPTOALLOTEICHUS HINDUSTANUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Work: 0.176 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure and site-directed mutagenesis of a bleomycin resistance protein and their significance for drug sequestering.

Dumas, P.Bergdoll, M.Cagnon, C.Masson, J.M.

(1994) EMBO J 13: 2483-2492

  • DOI: https://doi.org/10.1002/j.1460-2075.1994.tb06535.x
  • Primary Citation of Related Structures:  
    1BYL

  • PubMed Abstract: 

    The antibiotic bleomycin, a strong DNA cutting agent, is naturally produced by actinomycetes which have developed a resistance mechanism against such a lethal compound. The crystal structure, at 2.3 A resolution, of a bleomycin resistance protein of 14 kDa reveals a structure in two halves with the same alpha/beta fold despite no sequence similarity. The crystal packing shows compact dimers with a hydrophobic interface and involved in mutual chain exchange. Two independent solution studies (analytical centrifugation and light scattering) showed that this dimeric form is not a packing artefact but is indeed the functional one. Furthermore, light scattering also showed that one dimer binds two antibiotic molecules as expected. A crevice located at the dimer interface, as well as the results of a site-directed mutagenesis study, led to a model wherein two bleomycin molecules are completely sequestered by one dimer. This provides a novel insight into antibiotic resistance due to drug sequestering, and probably also into drug transport and excretion.


  • Organizational Affiliation

    Laboratoire de Biologie Structurale, CNRS, Strasbourg, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN (BLEOMYCIN RESISTANCE PROTEIN)125Streptoalloteichus hindustanusMutation(s): 0 
Gene Names: SH BLE
UniProt
Find proteins for P17493 (Streptoalloteichus hindustanus)
Explore P17493 
Go to UniProtKB:  P17493
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17493
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Work: 0.176 
  • R-Value Observed: 0.176 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.4α = 90
b = 48.4β = 90
c = 111.5γ = 90
Software Package:
Software NamePurpose
LOCHVAT(SEEmodel building
CCP4model building
PHASERphasing
X-PLORrefinement
X-GENdata reduction
X-GENdata scaling
LOCHVATphasing
CCP4phasing
PHARE)phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-10-21
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description
  • Version 1.4: 2024-02-07
    Changes: Data collection, Database references