1BT6 | pdb_00001bt6

P11 (S100A10), LIGAND OF ANNEXIN II IN COMPLEX WITH ANNEXIN II N-TERMINUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.307 (Depositor), 0.316 (DCC) 
  • R-Value Work: 
    0.228 (Depositor), 0.268 (DCC) 
  • R-Value Observed: 
    0.233 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 1BT6

This is version 1.4 of the entry. See complete history

Literature

The crystal structure of a complex of p11 with the annexin II N-terminal peptide.

Rety, S.Sopkova, J.Renouard, M.Osterloh, D.Gerke, V.Tabaries, S.Russo-Marie, F.Lewit-Bentley, A.

(1999) Nat Struct Biol 6: 89-95

  • DOI: https://doi.org/10.1038/4965
  • Primary Citation Related Structures: 
    1A4P, 1BT6

  • PubMed Abstract: 

    The aggregation and membrane fusion properties of annexin II are modulated by the association with a regulatory light chain called p11.p11 is a member of the S100 EF-hand protein family, which is unique in having lost its calcium-binding properties. We report the first structure of a complex between p11 and its cognate peptide, the N-terminus of annexin II, as well as that of p11 alone. The basic unit for p11 is a tight, non-covalent dimer. In the complex, each annexin II peptide forms hydrophobic interactions with both p11 monomers, thus providing a structural basis for high affinity interactions between an S100 protein and its target sequence. Finally, p11 forms a disulfide-linked tetramer in both types of crystals thus suggesting a model for an oxidized form of other S100 proteins that have been found in the extracellular milieu.


  • Organizational Affiliation
    • LURE (CNRS, CEA, MENRT), Centre Universitaire Paris-Sud, Orsay, France.

Macromolecule Content 

  • Total Structure Weight: 25.15 kDa 
  • Atom Count: 1,662 
  • Modeled Residue Count: 206 
  • Deposited Residue Count: 220 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
S100A10
A, B
96Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P60903 (Homo sapiens)
Explore P60903 
Go to UniProtKB:  P60903
PHAROS:  P60903
GTEx:  ENSG00000197747 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60903
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ANNEXIN II
C, D
14Gallus gallusMutation(s): 0 
Gene Names: ANXA2
UniProt
Find proteins for P17785 (Gallus gallus)
Explore P17785 
Go to UniProtKB:  P17785
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17785
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.307 (Depositor), 0.316 (DCC) 
  • R-Value Work:  0.228 (Depositor), 0.268 (DCC) 
  • R-Value Observed: 0.233 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.6α = 90
b = 56.4β = 114.5
c = 64.3γ = 90
Software Package:
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-01-27
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-09
    Changes: Database references, Derived calculations, Refinement description
  • Version 1.4: 2024-11-20
    Changes: Data collection, Structure summary