1BI6 | pdb_00001bi6

NMR STRUCTURE OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 

wwPDB Validation 3D Report Full Report

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Literature

Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.

Hatano, K.Kojima, M.Tanokura, M.Takahashi, K.

(1996) Biochemistry 35: 5379-5384

  • DOI: https://doi.org/10.1021/bi952754+
  • Primary Citation Related Structures: 
    1BI6, 2BI6

  • PubMed Abstract: 

    Bromelain inhibitor VI from pineapple stem (BI-VI) is a unique double-chain inhibitor with an 11-residue light chain and a 41-residue heavy chain by disulfide bonds and inhibits the cysteine proteinase bromelain competitively. The structure of BI-VI in aqueous solution was determined using nuclear magnetic resonance spectroscopy and simulated annealing-based calculations. Its three-dimensional structure was shown to be composed of two distinct domains, each of which is formed by a three-stranded antiparallel beta-sheet. Unexpectedly, BI-VI was found to share a similar folding and disulfide bond connectivities not with cystatin superfamily inhibitors which inhibit the same cysteine proteinases but with the Bowman-Birk trypsin/chymotrypsin inhibitor from soybean (BBI-I). BBI-I is a 71-residue inhibitor which has two independent inhibitory sites toward the serine proteinases trypsin and chymotrypsin. These structural similarities with BBI-I suggest that they have evolved from a common ancestor and differentiated in function during a course of molecular evolution.


  • Organizational Affiliation
    • Department of Biophysics and Biochemistry, Faculty of Science, University of Tokyo, Japan.

Macromolecule Content 

  • Total Structure Weight: 5.89 kDa 
  • Atom Count: 403 
  • Modeled Residue Count: 52 
  • Deposited Residue Count: 52 
  • Unique protein chains: 2

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
BROMELAIN INHIBITOR VIA [auth L]11Ananas comosusMutation(s): 0 
UniProt
Find proteins for P01068 (Ananas comosus)
Explore P01068 
Go to UniProtKB:  P01068
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01068
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
BROMELAIN INHIBITOR VIB [auth H]41Ananas comosusMutation(s): 0 
UniProt
Find proteins for P01068 (Ananas comosus)
Explore P01068 
Go to UniProtKB:  P01068
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01068
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-04-03
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other
  • Version 1.4: 2024-10-09
    Changes: Data collection, Database references, Structure summary