1BG8

HDEA FROM ESCHERICHIA COLI

PDB DOI: https://doi.org/10.2210/pdb1BG8/pdb

Classification: PERIPLASMIC
Organism(s): Escherichia coli
Mutation(s): No

Deposited: 1998-06-05 Released: 1998-09-16
Deposition Author(s): Yang, F., Gustafson, K.R., Boyd, M.R., Wlodawer, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.278
R-Value Work: 0.163
R-Value Observed: 0.163

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Escherichia coli HdeA.

Yang, F., Gustafson, K.R., Boyd, M.R., Wlodawer, A.

(1998) Nat Struct Biol 5: 763-764

PubMed: 9731767 Search on PubMed
DOI: https://doi.org/10.1038/1796
Primary Citation of Related Structures:
1BG8

Organizational Affiliation

Macromolecular Structure Laboratory, ABL-Basic Research Program, DTP, NCI-FCRDC, Frederick, Maryland 21702-1201, USA.

Macromolecule Content

Total Structure Weight: 29.26 kDa
Atom Count: 1,988
Modelled Residue Count: 228
Deposited Residue Count: 267
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HDEA	A, B, C	89	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0AES9 (Escherichia coli (strain K12)) Explore P0AES9 Go to UniProtKB: P0AES9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AES9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.278
R-Value Work: 0.163
R-Value Observed: 0.163
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.476	α = 90
b = 76.149	β = 98.93
c = 73.607	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1998-09-16

Deposition Author(s):

Gustafson, K.R.

Revision History (Full details and data files)

Version 1.0: 1998-09-16
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.