1ALD | pdb_00001ald

ACTIVITY AND SPECIFICITY OF HUMAN ALDOLASES


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Work: 
    0.220 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1ALD

This is version 1.5 of the entry. See complete history

Literature

Activity and specificity of human aldolases.

Gamblin, S.J.Davies, G.J.Grimes, J.M.Jackson, R.M.Littlechild, J.A.Watson, H.C.

(1991) J Mol Biology 219: 573-576

  • DOI: https://doi.org/10.1016/0022-2836(91)90650-u
  • Primary Citation Related Structures: 
    1ALD

  • PubMed Abstract: 

    The structure of the type I fructose 1,6-bisphosphate aldolase from human muscle has been extended from 3 A to 2 A resolution. The improvement in the resulting electron density map is such that the 20 or so C-terminal residues, known to be associated with activity and isozyme specificity, have been located. The side-chain of the Schiff's base-forming lysine 229 is located towards the centre of an eight-stranded beta-barrel type structure. The C-terminal "tail" extends from the rim of the beta-barrel towards lysine 229, thus forming part of the active site of the enzyme. This structural arrangement appears to explain the difference in activity and specificity of the three tissue-specific human aldolases and helps with our understanding of the type I aldolase reaction mechanism.


  • Organizational Affiliation
    • Department of Biochemistry, School of Medical Sciences, University of Bristol, U.K.

Macromolecule Content 

  • Total Structure Weight: 39.34 kDa 
  • Atom Count: 2,763 
  • Modeled Residue Count: 363 
  • Deposited Residue Count: 363 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ALDOLASE A363Homo sapiensMutation(s): 0 
EC: 4.1.2.13
UniProt & NIH Common Fund Data Resources
Find proteins for P04075 (Homo sapiens)
Explore P04075 
Go to UniProtKB:  P04075
PHAROS:  P04075
GTEx:  ENSG00000149925 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04075
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Work:  0.220 (Depositor) 
Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.34α = 90
b = 96.34β = 90
c = 167γ = 120
Software Package:
Software NamePurpose
X-PLORrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 1992-01-15 
  • Deposition Author(s): Watson, H.C.

Revision History  (Full details and data files)

  • Version 1.0: 1992-01-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other
  • Version 1.4: 2021-07-07
    Changes: Refinement description
  • Version 1.5: 2024-02-07
    Changes: Data collection, Database references