10UJ | pdb_000010uj

Hna Monomer

  • Classification: IMMUNE SYSTEM
  • Organism(s): Sinorhizobium meliloti
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2026-02-09 Released: 2026-06-03 
  • Deposition Author(s): Hooper, M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Welch Foundation

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 10UJ

This is version 1.0 of the entry. See complete history

Literature

Phage-encoded factor stimulates DNA degradation by the Hna anti-phage defense system.

Hooper, M.M.Hoover, B.T.Zhang, H.Franco, A.S.Finkelstein, I.J.Taylor, D.W.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-73157-2
  • Primary Citation Related Structures: 
    10UJ

  • PubMed Abstract: 

    Prokaryotic organisms have evolved unique strategies to acquire immunity against the constant threat of bacteriophage (phage) and mobile genetic elements. Hna is a broadly distributed anti-phage immune system that confers resistance against diverse phage by eliciting an abortive infection response. Using a combination of biochemistry, cryo-electron microscopy, and single-molecule fluorescence imaging, we reveal that Hna functions as a 3'-5' single-stranded DNA exonuclease that forms an auto-inhibited dimer under physiological ATP concentrations. Biochemical and mutational analyses demonstrate that Hna catalytic outputs are governed by kinetic partitioning between ATPase and nuclease active sites. Disruption of this balance enhances DNA cleavage and causes cellular toxicity. Furthermore, we show that a phage-encoded single-stranded DNA-binding protein (5 A SSB) destabilizes the autoinhibited Hna dimer and shifts catalytic partitioning toward dysregulated nuclease activation. Conversely, phage escape mutants encode SSB variants that evade Hna surveillance by adopting higher order stoichiometries with enhanced DNA binding affinity. Our work establishes the molecular basis of Hna-mediated anti-phage activity and provides insights into how phage-encoded proteins can directly stimulate a bacterial immune response.


  • Organizational Affiliation
    • Department of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.

Macromolecule Content 

  • Total Structure Weight: 94.84 kDa 
  • Atom Count: 6,490 
  • Modeled Residue Count: 821 
  • Deposited Residue Count: 845 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Helicase ATP-binding domain-containing protein845Sinorhizobium melilotiMutation(s): 0 
Gene Names: SMa2245
UniProt
Find proteins for Q92XN4 (Rhizobium meliloti (strain 1021))
Explore Q92XN4 
Go to UniProtKB:  Q92XN4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92XN4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data

  • Released Date: 2026-06-03 
  • Deposition Author(s): Hooper, M.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--
Welch FoundationUnited StatesF-1938

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-03
    Type: Initial release