10EG | pdb_000010eg

Thermosynechococcus vestitus (BP-1) Photosystem I Complexed with Platinum Nanoparticles


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Molecular design principles for Photosystem I-based biohybrid solar fuel catalysts.

Emerson, M.D.Damaraju, S.N.S.Short, A.H.Alvord, Z.B.Palmer, Z.A.Mehra, H.S.Brininger, C.M.Vermaas, J.V.Utschig, L.M.Gisriel, C.J.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.03.23.713776
  • Primary Citation Related Structures: 
    10EG

  • PubMed Abstract: 

    Direct solar-to-chemical conversion offers a compelling route to clean, dispatchable energy. Photosystem I (PSI), an evolutionarily optimized light-driven oxidoreductase central to oxygenic photosynthesis, can be repurposed for direct solar-fuel production by efficiently coupling its photochemistry to catalysts, thereby storing sunlight as chemical energy in the H-H bond of H2. One promising architecture integrates PSI with Pt nanoparticle (PtNP) catalysts to create photocatalytic PSI-PtNP biohybrids. Advancing these systems requires molecular-level insight into protein-nanoparticle interactions and the bio-nano electron transfer pathways that govern activity; however, progress has been constrained by limited structural data to guide rational design. Here, we present two molecular structures of active PSI-PtNP assemblies that (a) compare thermophilic and mesophilic PSI scaffolds and (b) probe how removal of the terminal [4Fe-4S] clusters and stromal subunits in PSI reshapes protein-nanoparticle interfaces and photocatalysis. Structural analyses and molecular dynamics simulations define the interface topology, electrostatics, and cofactor-to-nanoparticle distances, revealing key molecular features that control biohybrid formation and electron transfer efficiency. These data establish mechanistic links between scaffold composition, bio-nano interface geometry, and catalytic performance, yielding design principles for optimizing PSI-PtNP architectures. The resulting structure-function insights provide a blueprint for engineering PSI-based solar-fuels systems and, more broadly, inform the design of protein-nanomaterial interfaces for light-driven catalysis.


  • Organizational Affiliation
    • Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.

Macromolecule Content 

  • Total Structure Weight: 1,080.64 kDa 
  • Atom Count: 71,748 
  • Modeled Residue Count: 6,726 
  • Deposited Residue Count: 7,029 
  • Unique protein chains: 12

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1A,
B [auth G],
C [auth a]
755Thermosynechococcus vestitus BP-1Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for P0A405 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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UniProt GroupP0A405
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2D [auth B],
E [auth H],
F [auth b]
741Thermosynechococcus vestitus BP-1Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for P0A407 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur centerG [auth C],
H [auth N],
I [auth c]
81Thermosynechococcus vestitus BP-1Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for P0A415 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IIJ [auth D],
K [auth O],
L [auth d]
139Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A420 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IVM [auth E],
N [auth P],
O [auth e]
76Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A423 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IIIP [auth F],
Q,
R [auth f]
164Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A401 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIIIS [auth I],
T [auth R],
U [auth i]
38Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A427 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IXV [auth J],
W [auth S],
X [auth j]
41Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A429 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit PsaKAA [auth k],
Y [auth K],
Z [auth T]
83Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A425 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIBA [auth L],
CA [auth U],
DA [auth l]
155Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for Q8DGB4 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIIEA [auth M],
FA [auth V],
GA [auth m]
31Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for P0A403 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem I 4.8K proteinHA [auth W],
IA [auth X],
JA [auth x]
39Thermosynechococcus vestitus BP-1Mutation(s): 0 
UniProt
Find proteins for Q8DKP6 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1))
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Reference Sequence

Small Molecules

Ligands 8 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CLA
(Subject of Investigation/LOI)

Query on CLA



Download:Ideal Coordinates CCD File
AB [auth A]
AD [auth G]
AF [auth a]
AH [auth B]
AI [auth B]
AB [auth A],
AD [auth G],
AF [auth a],
AH [auth B],
AI [auth B],
AJ [auth H],
AK [auth H],
AL [auth b],
AM [auth b],
AP [auth x],
BB [auth A],
BD [auth G],
BF [auth a],
BH [auth B],
BJ [auth H],
BK [auth H],
BL [auth b],
BN [auth J],
CB [auth A],
CD [auth G],
CF [auth a],
CH [auth B],
CJ [auth H],
CL [auth b],
CN [auth J],
DB [auth A],
DD [auth G],
DF [auth a],
DH [auth B],
DJ [auth H],
DL [auth b],
DN [auth J],
DO [auth U],
EB [auth A],
ED [auth G],
EF [auth a],
EH [auth B],
EJ [auth H],
EL [auth b],
FB [auth A],
FD [auth G],
FF [auth a],
FH [auth B],
FJ [auth H],
FL [auth b],
GB [auth A],
GD [auth G],
GF [auth a],
GH [auth B],
GJ [auth H],
GL [auth b],
GN [auth S],
HB [auth A],
HD [auth G],
HF [auth a],
HH [auth B],
HJ [auth H],
HL [auth b],
HN [auth S],
HO [auth U],
IB [auth A],
ID [auth G],
IE [auth G],
IF [auth a],
IG [auth a],
IH [auth B],
IJ [auth H],
IL [auth b],
IO [auth U],
JB [auth A],
JC [auth A],
JD [auth G],
JF [auth a],
JG [auth a],
JH [auth B],
JJ [auth H],
JL [auth b],
JO [auth U],
KB [auth A],
KD [auth G],
KE [auth a],
KF [auth a],
KG [auth B],
KH [auth B],
KJ [auth H],
KL [auth b],
KN [auth j],
LA [auth A],
LB [auth A],
LC [auth G],
LD [auth G],
LE [auth a],
LF [auth a],
LG [auth B],
LH [auth B],
LI [auth H],
LJ [auth H],
LL [auth b],
LN [auth j],
MA [auth A],
MB [auth A],
MC [auth G],
MD [auth G],
ME [auth a],
MF [auth a],
MG [auth B],
MH [auth B],
MI [auth H],
MJ [auth H],
MK [auth b],
ML [auth b],
MN [auth j],
NA [auth A],
NB [auth A],
NC [auth G],
ND [auth G],
NE [auth a],
NF [auth a],
NG [auth B],
NH [auth B],
NI [auth H],
NJ [auth H],
NK [auth b],
NL [auth b],
NO [auth l],
OA [auth A],
OB [auth A],
OC [auth G],
OD [auth G],
OE [auth a],
OF [auth a],
OH [auth B],
OI [auth H],
OJ [auth H],
OK [auth b],
OL [auth b],
OO [auth l],
PA [auth A],
PB [auth A],
PC [auth G],
PD [auth G],
PE [auth a],
PF [auth a],
PG [auth B],
PH [auth B],
PJ [auth H],
PL [auth b],
PN [auth K],
PO [auth l],
QA [auth A],
QB [auth A],
QC [auth G],
QD [auth G],
QE [auth a],
QF [auth a],
QG [auth B],
QH [auth B],
QI [auth H],
QJ [auth H],
QK [auth b],
QL [auth b],
QN [auth T],
RA [auth A],
RB [auth A],
RC [auth G],
RD [auth G],
RE [auth a],
RF [auth a],
RG [auth B],
RH [auth B],
RI [auth H],
RJ [auth H],
RK [auth b],
RL [auth b],
RM [auth F],
RN [auth T],
RO [auth M],
SA [auth A],
SB [auth A],
SC [auth G],
SD [auth G],
SE [auth a],
SF [auth a],
SG [auth B],
SH [auth B],
SI [auth H],
SJ [auth H],
SK [auth b],
SL [auth b],
SN [auth k],
TA [auth A],
TB [auth A],
TC [auth G],
TD [auth G],
TE [auth a],
TF [auth a],
TG [auth B],
TH [auth B],
TI [auth H],
TJ [auth H],
TK [auth b],
TL [auth b],
TM [auth Q],
TN [auth k],
TO [auth V],
UA [auth A],
UB [auth A],
UC [auth G],
UD [auth G],
UE [auth a],
UF [auth a],
UG [auth B],
UH [auth B],
UI [auth H],
UJ [auth H],
UK [auth b],
UL [auth b],
UM [auth Q],
UN [auth L],
VA [auth A],
VB [auth A],
VC [auth G],
VD [auth G],
VE [auth a],
VF [auth a],
VG [auth B],
VH [auth B],
VI [auth H],
VJ [auth H],
VK [auth b],
VL [auth b],
VO [auth m],
WA [auth A],
WB [auth A],
WC [auth G],
WD [auth G],
WE [auth a],
WF [auth a],
WG [auth B],
WH [auth B],
WI [auth H],
WJ [auth H],
WK [auth b],
WL [auth b],
WO [auth m],
XA [auth A],
XB [auth A],
XC [auth G],
XD [auth G],
XE [auth a],
XF [auth a],
XG [auth B],
XH [auth B],
XI [auth H],
XJ [auth H],
XK [auth b],
XL [auth b],
XN [auth L],
YA [auth A],
YB [auth A],
YC [auth G],
YD [auth G],
YE [auth a],
YF [auth a],
YG [auth B],
YH [auth B],
YI [auth H],
YJ [auth H],
YK [auth b],
YL [auth b],
YM [auth R],
YN [auth L],
YO [auth W],
ZA [auth A],
ZB [auth A],
ZC [auth G],
ZE [auth a],
ZG [auth B],
ZH [auth B],
ZI [auth H],
ZJ [auth H],
ZK [auth b],
ZL [auth b],
ZN [auth L],
ZO [auth X]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
CL0

Query on CL0



Download:Ideal Coordinates CCD File
JE [auth a],
KA [auth A],
KC [auth G]
CHLOROPHYLL A ISOMER
C55 H72 Mg N4 O5
VIQFHHZSLDFWDU-DVXFRRMCSA-M
LMG

Query on LMG



Download:Ideal Coordinates CCD File
JI [auth B],
JM [auth b],
KK [auth H]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
LHG

Query on LHG



Download:Ideal Coordinates CCD File
GE [auth G]
GG [auth a]
HC [auth A]
HE [auth G]
HG [auth a]
GE [auth G],
GG [auth a],
HC [auth A],
HE [auth G],
HG [auth a],
IC [auth A]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
BCR

Query on BCR



Download:Ideal Coordinates CCD File
AE [auth G]
AG [auth a]
AN [auth i]
AO [auth L]
BC [auth A]
AE [auth G],
AG [auth a],
AN [auth i],
AO [auth L],
BC [auth A],
BE [auth G],
BG [auth a],
CC [auth A],
CE [auth G],
CG [auth a],
CI [auth B],
CM [auth b],
CO [auth L],
DC [auth A],
DE [auth G],
DG [auth a],
DI [auth B],
DK [auth H],
DM [auth b],
EC [auth A],
EE [auth G],
EG [auth a],
EI [auth B],
EK [auth H],
EM [auth b],
EN [auth J],
EO [auth U],
FC [auth A],
FE [auth G],
FG [auth a],
FI [auth B],
FK [auth H],
FM [auth b],
FN [auth J],
FO [auth U],
GC [auth A],
GI [auth B],
GK [auth H],
GM [auth b],
HI [auth B],
HK [auth H],
HM [auth b],
II [auth B],
IK [auth H],
IM [auth b],
IN [auth S],
JK [auth H],
JN [auth S],
KI [auth B],
KM [auth b],
KO [auth U],
LK [auth H],
LO [auth l],
MO [auth l],
NN [auth j],
ON [auth j],
QO [auth l],
SM [auth F],
SO [auth M],
UO [auth V],
VM [auth Q],
VN [auth L],
WM [auth f],
XM [auth I],
XO [auth m],
ZM [auth R]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
PQN

Query on PQN



Download:Ideal Coordinates CCD File
AC [auth A]
BI [auth B]
BM [auth b]
CK [auth H]
ZD [auth G]
AC [auth A],
BI [auth B],
BM [auth b],
CK [auth H],
ZD [auth G],
ZF [auth a]
PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4

Query on SF4



Download:Ideal Coordinates CCD File
LM [auth C]
MM [auth C]
NM [auth N]
OG [auth B]
OM [auth N]
LM [auth C],
MM [auth C],
NM [auth N],
OG [auth B],
OM [auth N],
PI [auth H],
PK [auth b],
PM [auth c],
QM [auth c]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
CA

Query on CA



Download:Ideal Coordinates CCD File
BO [auth L],
GO [auth U],
WN [auth L]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-01
    Type: Initial release