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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "VIRUS/RECEPTOR"

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (12)
	Echovirus E11 (2)
	Human rhinovirus sp. (2)
	Canine adenovirus 2 (1)
	Coxsackievirus A21 (1)
	Coxsackievirus B3 (strain Woodruff) (1)
	Dengue virus (1)
	Echovirus E7 (1)
	Human poliovirus 1 Mahoney (1)
	Poliovirus 1 (1)

More...

Taxonomy

	Eukaryota (12)
	Riboviria (11)
	Varidnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (10)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (4)

Symmetry Type

	Icosahedral (11)
	Cyclic (1)

SCOP Classification

	All beta proteins (6)
	Low resolution protein structures (6)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (3)
	Alpha and beta proteins (a+b) (1)

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1 to 12 of 12 Structures

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1D3E \| pdb_00001d3e	Download File View File

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

Bella, J., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

Released	2000-01-19
Method	ELECTRON MICROSCOPY 28 Å
Organisms	Homo sapiens Human rhinovirus sp.
Macromolecule	PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) (protein) PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) (protein)

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1D3I \| pdb_00001d3i	Download File View File

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

Bella, J., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

Released	2000-01-19
Method	ELECTRON MICROSCOPY 26 Å
Organisms	Homo sapiens Human rhinovirus sp.
Macromolecule	PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) (protein) PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) (protein)

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1DGI \| pdb_00001dgi	Download File View File

Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155

He, Y., Bowman, V.D., Mueller, S., Bator, C.M., Bella, J., Peng, X., Baker, T.S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2000) Proc Natl Acad Sci U S A 97: 79-84

Released	2000-01-24
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Homo sapiens Poliovirus 1
Macromolecule	POLIOVIRUS RECEPTOR (protein) VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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1JEW \| pdb_00001jew	Download File View File

CRYO-EM STRUCTURE OF COXSACKIEVIRUS B3(M STRAIN) WITH ITS CELLULAR RECEPTOR, COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (CAR).

Rossmann, M.G., He, Y.

(2001) Nat Struct Biol 8: 874-878

Released	2001-10-03
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Coxsackievirus B3 (strain Woodruff) Homo sapiens
Macromolecule	COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (protein) COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 (protein) COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 (protein) COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 (protein) COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 (protein)

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1M11 \| pdb_00001m11	Download File View File

structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy

He, Y., Lin, F., Chipman, P.R., Bator, C.M., Baker, T.S., Shoham, M., Kuhn, R.J., Medof, M.E., Rossmann, M.G.

(2002) Proc Natl Acad Sci U S A 99: 10325-10329

Released	2002-08-28
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Echovirus E7 Homo sapiens
Macromolecule	COAT PROTEIN VP1 (protein) COAT PROTEIN VP2 (protein) COAT PROTEIN VP3 (protein) decay-accelerating factor (protein)

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1NN8 \| pdb_00001nn8	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus

He, Y., Mueller, S., Chipman, P.R., Bator, C.M., Peng, X., Bowman, V.D., Mukhopadhyay, S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2003) J Virol 77: 4827-4835

Released	2004-01-27
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	coat protein VP1 (protein) coat protein VP2 (protein) coat protein VP3 (protein) coat protein VP4 (protein) poliovirus receptor (protein)
Unique Ligands	MYR

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1UPN \| pdb_00001upn	Download File View File

COMPLEX OF ECHOVIRUS TYPE 12 WITH DOMAINS 3 AND 4 OF ITS RECEPTOR DECAY ACCELERATING FACTOR (CD55) BY CRYO ELECTRON MICROSCOPY AT 16 A

Bhella, D., Goodfellow, I.G., Roversi, P., Pettigrew, D., Chaudry, Y., Evans, D.J., Lea, S.M.

(2004) J Biological Chem 279: 8325

Released	2004-01-07
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Echovirus E11 Homo sapiens
Macromolecule	COMPLEMENT DECAY-ACCELERATING FACTOR (protein) ECHOVIRUS 11 COAT PROTEIN VP1 (protein) ECHOVIRUS 11 COAT PROTEIN VP2 (protein) ECHOVIRUS 11 COAT PROTEIN VP3 (protein) ECHOVIRUS 11 COAT PROTEIN VP4 (protein)

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1V9U \| pdb_00001v9u	Download File View File

Human Rhinovirus 2 bound to a fragment of its cellular receptor protein

Verdaguer, N., Fita, I., Reithmayer, M., Moser, R., Blaas, D.

(2004) Nat Struct Mol Biol 11: 429-434

Released	2004-05-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens rhinovirus A2
Macromolecule	Coat protein VP1 (protein) Coat protein VP2 (protein) Coat protein VP3 (protein) Coat protein VP4 (protein) LDL-receptor class A 3 (protein)
Unique Ligands	CA, DAO

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1Z7Z \| pdb_00001z7z	Download File View File

Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi

Xiao, C., Bator-Kelly, C.M., Rieder, E., Chipman, P.R., Craig, A., Kuhn, R.J., Wimmer, E., Rossmann, M.G.

(2005) Structure 13: 1019-1033

Released	2005-08-02
Method	ELECTRON MICROSCOPY 8 Å
Organisms	Coxsackievirus A21 Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG

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2B6B \| pdb_00002b6b	Download File View File

Cryo EM structure of Dengue complexed with CRD of DC-SIGN

Pokidysheva, E., Zhang, Y., Battisti, A.J., Bator-Kelly, C.M., Chipman, P.R., Gregorio, G., Hendrickson, W.A., Kuhn, R.J., Rossmann, M.G.

(2006) Cell 124: 485-493

Released	2006-03-07
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Dengue virus Homo sapiens
Macromolecule	CD209 antigen (protein) envelope glycoprotein (protein)

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2C8I \| pdb_00002c8i	Download File View File

Complex Of Echovirus Type 12 With Domains 1, 2, 3 and 4 Of Its Receptor Decay Accelerating Factor (Cd55) By Cryo Electron Microscopy At 16 A

Pettigrew, D.M., Williams, D.T., Kerrigan, D., Evans, D.J., Lea, S.M., Bhella, D.

(2006) J Biological Chem 281: 5169

Released	2006-01-17
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Echovirus E11 Homo sapiens
Macromolecule	COMPLEMENT DECAY-ACCELERATING FACTOR (protein) ECHOVIRUS 11 COAT PROTEIN VP1 (protein) ECHOVIRUS 11 COAT PROTEIN VP2 (protein) ECHOVIRUS 11 COAT PROTEIN VP3 (protein) ECHOVIRUS 11 COAT PROTEIN VP4 (protein)

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2J1K \| pdb_00002j1k	Download File View File

CAV-2 fibre head in complex with CAR D1

Seiradake, E., Lortat-Jacob, H., Billet, O., Kremer, E.J., Cusack, S.

(2006) J Biological Chem 281: 33704

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Canine adenovirus 2 Homo sapiens
Macromolecule	COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (protein) FIBER PROTEIN (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1D3E | pdb_00001d3e

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

1D3I | pdb_00001d3i

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

1DGI | pdb_00001dgi

Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155

1JEW | pdb_00001jew

CRYO-EM STRUCTURE OF COXSACKIEVIRUS B3(M STRAIN) WITH ITS CELLULAR RECEPTOR, COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (CAR).

1M11 | pdb_00001m11

structural model of human decay-accelerating factor bound to echovirus 7 from cryo-electron microscopy

1NN8 | pdb_00001nn8

CryoEM structure of poliovirus receptor bound to poliovirus

1UPN | pdb_00001upn

COMPLEX OF ECHOVIRUS TYPE 12 WITH DOMAINS 3 AND 4 OF ITS RECEPTOR DECAY ACCELERATING FACTOR (CD55) BY CRYO ELECTRON MICROSCOPY AT 16 A

1V9U | pdb_00001v9u

Human Rhinovirus 2 bound to a fragment of its cellular receptor protein

1Z7Z | pdb_00001z7z

Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi

2B6B | pdb_00002b6b

Cryo EM structure of Dengue complexed with CRD of DC-SIGN

2C8I | pdb_00002c8i

Complex Of Echovirus Type 12 With Domains 1, 2, 3 and 4 Of Its Receptor Decay Accelerating Factor (Cd55) By Cryo Electron Microscopy At 16 A

2J1K | pdb_00002j1k

CAV-2 fibre head in complex with CAR D1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1D3E | pdb_00001d3e

1D3I | pdb_00001d3i

1DGI | pdb_00001dgi

1JEW | pdb_00001jew

1M11 | pdb_00001m11

1NN8 | pdb_00001nn8

1UPN | pdb_00001upn

1V9U | pdb_00001v9u

1Z7Z | pdb_00001z7z

2B6B | pdb_00002b6b

2C8I | pdb_00002c8i

2J1K | pdb_00002j1k