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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSCRIPTION/protein binding"

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (27)
	Mus musculus (7)
	Danio rerio (2)
	Drosophila melanogaster (2)
	Escherichia coli (1)

Taxonomy

	Eukaryota (32)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (25)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (33)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (11)
	2.5 - 3.0 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (21)
	2015 - 2019 (7)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (28)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All alpha proteins (7)
	All beta proteins (4)
	Artifacts (6)
	Small proteins (1)

AllSelected

1 to 25 of 33 Structures

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2HV1 \| pdb_00002hv1	Download File View File

HADDOCK structure of ARNT PAS-B Homodimer

Card, P.B., Gardner, K.H.

To be published

Released	2007-08-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein)

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2KFT \| pdb_00002kft	Download File View File

NMR Solution structure of the first PHD finger domain of human Autoimmune Regulator (AIRE) in complex with Histone H3(1-20Cys) Peptide

Chakravarty, S., Zeng, L., Zhou, M.

(2009) Structure 17: 670-679

Released	2009-04-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Autoimmune regulator (protein) Histone H3 (protein)
Unique Ligands	ZN

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2KKR \| pdb_00002kkr	Download File View File

Solution structure of SCA7 zinc finger domain from human ataxin-7 protein

Wang, Y., Atkinson, A.R., Bonnet, J., Romier, C., Kieffer, B., Structural Proteomics in Europe (SPINE)

To be published

Released	2010-06-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ataxin-7 (protein)
Unique Ligands	ZN

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2KMD \| pdb_00002kmd	Download File View File

Ras signaling requires dynamic properties of Ets1 for phosphorylation-enhanced binding to co-activator CBP

Nelson, M.L., Kang, H., Lee, G.M., Blaszczak, A.G., Lau, D.K.W., McIntosh, L.P., Graves, B.J.

(2010) Proc Natl Acad Sci U S A 107: 10026-10031

Released	2010-05-05
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Protein C-ets-1 (protein)

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2LDM \| pdb_00002ldm	Download File View File

Solution structure of human PHF20 Tudor2 domain bound to a p53 segment containing a dimethyllysine analog p53K370me2

Cui, G., Botuyan, M., Mer, G.

(2012) Nat Struct Mol Biol 19: 916-924

Released	2012-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein (protein)

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2LYD \| pdb_00002lyd	Download File View File

The solution structure of the Dm DCP1 EVH1 domain in complex with the XRN1 DBM peptide

Truffault, V.

(2012) Nat Struct Mol Biol 19: 1324-1331

Released	2012-10-17
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Decapping protein 1 (protein) Pacman protein (protein)

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2N2H \| pdb_00002n2h	Download File View File

Solution structure of Sds3 in complex with Sin3A

Clark, M., Radhakrishnan, I.

(2015) Proc Natl Acad Sci U S A 112: E3669-E3678

Released	2015-07-15
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Paired amphipathic helix protein Sin3a (protein) Sin3 histone deacetylase corepressor complex component SDS3 (protein)

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3GS3 \| pdb_00003gs3	Download File View File

Structure of the N-terminal HEAT Domain of Symplekin from D. melanogaster

Kennedy, S.A., Redinbo, M.R.

(2009) J Mol Biology 392: 115-128

Released	2009-07-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Symplekin (protein)

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3KYS \| pdb_00003kys	Download File View File

Crystal structure of human YAP and TEAD complex

Li, Z., Zhao, B., Wang, P., Chen, F., Dong, Z., Yang, H., Guan, K.L., Xu, Y.

(2010) Genes Dev 24: 235-240

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	65 kDa Yes-associated protein (protein) Transcriptional enhancer factor TEF-1 (protein)

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3O34 \| pdb_00003o34	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	BTN, ZN

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3O35 \| pdb_00003o35	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(23-31)K27ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

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3O36 \| pdb_00003o36	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H4(14-19)K16ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

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3O37 \| pdb_00003o37	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(1-10)K4 peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

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3UVW \| pdb_00003uvw	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K5acK8ac)

Filippakopoulos, P., Felletar, I., Picaud, S., Keates, T., Muniz, J., Gileadi, O., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

(2012) Cell 149: 214-231

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone H4 (protein)
Unique Ligands	EDO

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3UVX \| pdb_00003uvx	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K12acK16ac)

Filippakopoulos, P., Picaud, S., Keates, T., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

(2012) Cell 149: 214-231

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) diacetylated histone 4 peptide (protein)
Unique Ligands	EDO, FMT, NA

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3UVY \| pdb_00003uvy	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K16acK20ac)

(2012) Cell 149: 214-231

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone H4 (protein)

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4DM6 \| pdb_00004dm6	Download File View File

Crystal structure of RARb LBD homodimer in complex with TTNPB

Osz, J., Brelivet, Y., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.

(2012) Proc Natl Acad Sci U S A 109: E588-E594

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Retinoic acid receptor beta (protein)
Unique Ligands	TTB

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4DM8 \| pdb_00004dm8	Download File View File

Crystal structure of RARb LBD in complex with 9cis retinoic acid

Osz, J., Br livet, Y., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.

(2012) Proc Natl Acad Sci U S A 109: E588-E594

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Retinoic acid receptor beta (protein)
Unique Ligands	REA

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4N4F \| pdb_00004n4f	Download File View File

Crystal Structure of the Bromodomain-PHD Finger Module of Human Transcriptional Co-Activator CBP in complex with di-Acetylated Histone 4 Peptide (H412acK16ac).

Plotnikov, A.N., Zhou, J., Zhou, M.-M.

(2014) Structure 22: 353-360

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein) Histone 4 Peptide (protein)
Unique Ligands	ZN

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4OWF \| pdb_00004owf	Download File View File

Crystal structure of the NEMO CoZi in complex with HOIP NZF1 domain

Rahighi, S., Fujita, H., Kawasaki, M., Kato, R., Iwai, K., Wakatsuki, S.

(2014) Mol Cell Biol 34: 1322-1335

Released	2014-02-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	E3 ubiquitin-protein ligase RNF31 (protein) NF-kappa-B essential modulator (protein)
Unique Ligands	ZN

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4RE1 \| pdb_00004re1	Download File View File

Crystal structure of human TEAD1 and disulfide-engineered YAP

Xu, Z., Zhou, Z.

(2015) FASEB J 29: 724-732

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-1 (protein) Yorkie homolog (protein)
Unique Ligands	CL

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5F28 \| pdb_00005f28	Download File View File

Crystal structure of FAT domain of Focal Adhesion Kinase (FAK) bound to the transcription factor MEF2C

Cardoso, A.C., Ambrosio, A.L.B., Dessen, A., Franchini, K.G.

(2016) Structure 24: 1301-1310

Released	2016-07-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	Focal adhesion kinase 1 (protein) MEF2C (protein)

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5I8B \| pdb_00005i8b	Download File View File

CBP in complex with Cpd23 ((R)-6-(3-(benzyloxy)phenyl)-4-methyl-1,3,4,5-tetrahydro-2H-benzo[b][1,4]diazepin-2-one)

Murray, J.M.

(2016) ACS Med Chem Lett 7: 531-536

Released	2016-04-20
Method	X-RAY DIFFRACTION 1.5218 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein)
Unique Ligands	69F, B3P, EDO, NA, PEG, ZN

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5I8G \| pdb_00005i8g	Download File View File

CBP in complex with Cpd637 ((R)-4-methyl-6-(1-methyl-3-(1-methyl-1H-pyrazol-4-yl)-1H-indazol-5-yl)-1,3,4,5-tetrahydro-2H-benzo[b][1,4]diazepin-2-one)

Murray, J.M.

(2016) ACS Med Chem Lett 7: 531-536

Released	2016-04-20
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein)
Unique Ligands	69E, B3P, EDO, NA, PEG, ZN

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5Z78 \| pdb_00005z78	Download File View File

Structure of TIRR/53BP1 complex

Dai, Y.X., Shan, S.

(2018) Nat Commun 9: 2123-2123

Released	2018-06-06
Method	X-RAY DIFFRACTION 1.762 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	TP53-binding protein 1 (protein) Tudor-interacting repair regulator protein (protein)

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2HV1 | pdb_00002hv1

2KFT | pdb_00002kft

2KKR | pdb_00002kkr

2KMD | pdb_00002kmd

2LDM | pdb_00002ldm

2LYD | pdb_00002lyd

2N2H | pdb_00002n2h

3GS3 | pdb_00003gs3

3KYS | pdb_00003kys

3O34 | pdb_00003o34

3O35 | pdb_00003o35

3O36 | pdb_00003o36

3O37 | pdb_00003o37

3UVW | pdb_00003uvw

3UVX | pdb_00003uvx

3UVY | pdb_00003uvy

4DM6 | pdb_00004dm6

4DM8 | pdb_00004dm8

4N4F | pdb_00004n4f

4OWF | pdb_00004owf

4RE1 | pdb_00004re1

5F28 | pdb_00005f28

5I8B | pdb_00005i8b

5I8G | pdb_00005i8g

5Z78 | pdb_00005z78