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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "OXYGEN BINDING"

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Search Summary

This query matches 113 Structures.

Refinements

Structure Determination Methodology

experimental (113)

Scientific Name of Source Organism

	Anadara inaequivalvis (15)
	Equus caballus (13)
	Homo sapiens (11)
	Aspergillus flavus (6)
	Escherichia coli (6)
	Mus musculus (5)
	Tetrahymena pyriformis (5)
	Methylococcus capsulatus str. Bath (4)
	Physeter macrocephalus (4)
	Alligator mississippiensis (3)

More...

Taxonomy

	Eukaryota (90)
	Bacteria (20)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (99)
	ELECTRON MICROSCOPY (14)

Polymer Entity Type

Protein (113)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (22)
	1.5 - 2.0 (44)
	2.0 - 2.5 (31)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1985 - 1989 (1)
	2005 - 2009 (36)
	2010 - 2014 (24)
	2015 - 2019 (15)
	2020 - 2024 (36)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (35)
	Hydrolases (6)

Symmetry Type

	Cyclic (69)
	Asymmetric (38)
	Dihedral (7)

SCOP Classification

	All alpha proteins (67)
	Alpha and beta proteins (a+b) (8)
	All beta proteins (2)
	Artifacts (4)

AllSelected

1 to 25 of 113 Structures

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2MHR \| pdb_00002mhr	Download File View File

STRUCTURE OF MYOHEMERYTHRIN IN THE AZIDOMET STATE AT 1.7(SLASH)1.3 ANGSTROMS RESOLUTION

Sheriff, S., Hendrickson, W.A.

(1987) J Mol Biology 197: 273-296

Released	1987-10-16
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Themiste hennahi
Macromolecule	MYOHEMERYTHRIN (protein)
Unique Ligands	AZI, FEO, SO4

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2QSS \| pdb_00002qss	Download File View File

Bovine hemoglobin at pH 6.3

Aranda IV, R., Richards, M.P., Phillips Jr., G.N.

(2008) Proteins 75: 217-230

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bos taurus
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	CMO, HEM

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2R1H \| pdb_00002r1h	Download File View File

met-Trout IV hemoglobin at pH 6.3

Aranda IV, R., Worley, C.E., Richards, M.P., Phillips Jr., G.N.

(2008) Proteins 75: 217-230

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Oncorhynchus mykiss
Macromolecule	Hemoglobin subunit alpha-4 (protein) Hemoglobin subunit beta-4 (protein)
Unique Ligands	EDO, HEM

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2R4W \| pdb_00002r4w	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: M37F with CO bound

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	CMO, HEM

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2R4X \| pdb_00002r4x	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: H69V/I114M co complex

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	CMO, HEM

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2R4Y \| pdb_00002r4y	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: H69V/I114M unliganded

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	HEM

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2R4Z \| pdb_00002r4z	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: Structure of I25W with CO

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	CMO, HEM, PO4

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2R80 \| pdb_00002r80	Download File View File

Pigeon Hemoglobin (OXY form)

Ponnuswamy, M.N., Packianathan, C., Sundaresan, S., Neelagandan, K., Palani, K., Muller, J.J., Heinemann, U.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Columba livia
Macromolecule	Hemoglobin subunit alpha-A (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM, OXY

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2RAO \| pdb_00002rao	Download File View File

X ray crystal structure of rabbit hemoglobin (oxy form) at 2.0 angstrom resolution

Sundaresan, S., Packianathan, C., Neelagandan, K., Ponnuswamy, M.N.

To be published

Released	2008-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Hemoglobin subunit alpha-1/2 (protein) Hemoglobin subunit beta-1/2 (protein)
Unique Ligands	HEM, OXY

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2VYW \| pdb_00002vyw	Download File View File

Hemoglobin (Hb2) from trematode Fasciola hepatica

Dewilde, S., Ioanitescu, A.I., Kiger, L., Gilany, K., Marden, M.C., Van Doorslaer, S., Vercruysse, J., Pesce, A., Nardini, M., Bolognesi, M., Moens, L.

(2008) Protein Sci 17: 1653

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Fasciola hepatica
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM, OXY

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2Z6S \| pdb_00002z6s	Download File View File

Crystal structure of the oxy myoglobin free from X-ray-induced photoreduction

Unno, M., Kusama, S., Chen, H., Shaik, S., Ikeda-Saito, M.

(2007) J Am Chem Soc 129: 13394-13395

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, OXY, SO4

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2Z6T \| pdb_00002z6t	Download File View File

Crystal structure of the ferric peroxo myoglobin

Unno, M., Kusama, S., Chen, H., Shaik, S., Ikeda-Saito, M.

(2007) J Am Chem Soc 129: 13394-13395

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, PER, SO4

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2Z85 \| pdb_00002z85	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: M37F Unliganded

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	HEM

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2Z8A \| pdb_00002z8a	Download File View File

Ligand Migration and Binding in The Dimeric Hemoglobin of Scapharca Inaequivalvis: I25W with CO Bound to HEME and in the Presence of 3 Atoms of XE

Knapp, J.E., Royer Jr., W.E., Nienhaus, K., Palladino, P., Nienhaus, G.U.

(2007) Biochemistry 46: 14018-14031

Released	2007-11-27
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Anadara inaequivalvis
Macromolecule	Globin-1 (protein)
Unique Ligands	CMO, HEM, PO4, XE

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3AQ5 \| pdb_00003aq5	Download File View File

Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(II)-O2 form

Igarashi, J., Kobayashi, K., Matsuoka, A.

(2011) J Biol Inorg Chem 16: 599-609

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Tetrahymena pyriformis
Macromolecule	Group 1 truncated hemoglobin (protein)
Unique Ligands	HEM, OXY

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3AQ6 \| pdb_00003aq6	Download File View File

Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(III) form

Igarashi, J., Kobayashi, K., Matsuoka, A.

(2011) J Biol Inorg Chem 16: 599-609

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Tetrahymena pyriformis
Macromolecule	Group 1 truncated hemoglobin (protein)
Unique Ligands	HEM

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3AQ7 \| pdb_00003aq7	Download File View File

Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Y25F mutant, Fe(III) form

Igarashi, J., Kobayashi, K., Matsuoka, A.

(2011) J Biol Inorg Chem 16: 599-609

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Tetrahymena pyriformis
Macromolecule	Group 1 truncated hemoglobin (protein)
Unique Ligands	HEM

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3AQ8 \| pdb_00003aq8	Download File View File

Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Q46E mutant, Fe(III) form

Igarashi, J., Kobayashi, K., Matsuoka, A.

(2011) J Biol Inorg Chem 16: 599-609

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Tetrahymena pyriformis
Macromolecule	Group 1 truncated hemoglobin (protein)
Unique Ligands	HEM

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3AQ9 \| pdb_00003aq9	Download File View File

Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Q50E mutant, Fe(III) form

Igarashi, J., Kobayashi, K., Matsuoka, A.

(2011) J Biol Inorg Chem 16: 599-609

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Tetrahymena pyriformis
Macromolecule	Group 1 truncated hemoglobin (protein)
Unique Ligands	HEM

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3BJ1 \| pdb_00003bj1	Download File View File

met-Perch Hemoglobin at pH 5.7

Aranda IV, R., Cai, H., Levin, E.J., Richards, M.P., Phillips Jr., G.N.

(2008) Proteins 75: 217-230

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Perca flavescens
Macromolecule	hemoglobin alpha (protein) hemoglobin beta (protein)
Unique Ligands	ACE, HEM

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3BJ2 \| pdb_00003bj2	Download File View File

met-Perch Hemoglobin at pH 6.3

Aranda IV, R., Cai, H., Levin, E.J., Richards, M.P., Phillips Jr., G.N.

(2008) Proteins 75: 217-230

Released	2008-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Perca flavescens
Macromolecule	hemoglobin alpha (protein) hemoglobin beta (protein)
Unique Ligands	ACE, HEM

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3BJ3 \| pdb_00003bj3	Download File View File

met-Perch hemoglobin at pH 8.0

Aranda IV, R., Cai, H., Levin, E.J., Richards, M.P., Phillips Jr., G.N.

(2008) Proteins 75: 217-230

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Perca flavescens
Macromolecule	hemoglobin alpha (protein) hemoglobin beta (protein)
Unique Ligands	ACE, HEM

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3CIU \| pdb_00003ciu	Download File View File

Site-Selective Glycosylation of Cysteine-93 beta on the Surface of Bovine Hemoglobin and its Application as a Novel Oxygen Therapeutic

Bhatt, V.S., Zhang, Y., Sun, G., Wang, P.G., Palmer, A.F.

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Bos taurus
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	5DP, HEM, O

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3D17 \| pdb_00003d17	Download File View File

A triply ligated crystal structure of relaxed state human hemoglobin

Safo, M.K., Musayev, F.N., Jenkins, J., Abraham, D.J.

To be published

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	CMO, HEM, MBN, PO4

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3D1K \| pdb_00003d1k	Download File View File

R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state

Vitagliano, L., Vergara, A., Bonomi, G., Merlino, A., Mazzarella, L.

(2008) J Am Chem Soc 130: 10527-10535

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Trematomus newnesi
Macromolecule	Hemoglobin subunit alpha-1 (protein) Hemoglobin subunit beta-1/2 (protein)
Unique Ligands	ACE, CMO, HEM

1 to 25 of 113 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2MHR | pdb_00002mhr

2QSS | pdb_00002qss

2R1H | pdb_00002r1h

2R4W | pdb_00002r4w

2R4X | pdb_00002r4x

2R4Y | pdb_00002r4y

2R4Z | pdb_00002r4z

2R80 | pdb_00002r80

2RAO | pdb_00002rao

2VYW | pdb_00002vyw

2Z6S | pdb_00002z6s

2Z6T | pdb_00002z6t

2Z85 | pdb_00002z85

2Z8A | pdb_00002z8a

3AQ5 | pdb_00003aq5

3AQ6 | pdb_00003aq6

3AQ7 | pdb_00003aq7

3AQ8 | pdb_00003aq8

3AQ9 | pdb_00003aq9

3BJ1 | pdb_00003bj1

3BJ2 | pdb_00003bj2

3BJ3 | pdb_00003bj3

3CIU | pdb_00003ciu

3D17 | pdb_00003d17

3D1K | pdb_00003d1k