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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 27996029

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Search Summary

This query matches 104 Structures.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (14)
	Synechocystis sp. PCC 6803 (10)
	Xanthomonas campestris pv. campestris str. 8004 (7)
	Sander vitreus (6)
	Synechocystis sp. PCC 6803 substr. Kazusa (6)
	Homo sapiens (5)
	Rhodopseudomonas palustris CGA009 (5)
	Prochlorococcus phage P-SSM2 (4)
	Pseudomonas aeruginosa (4)
	Severe acute respiratory syndrome coronavirus (4)

More...

Taxonomy

	Bacteria (61)
	Eukaryota (20)
	Riboviria (20)
	Duplodnaviria (4)

Experimental Method

	X-RAY DIFFRACTION (81)
	ELECTRON MICROSCOPY (23)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

Protein (104)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (24)
	2.0 - 2.5 (10)
	2.5 - 3.0 (30)
	3.0 - 3.5 (17)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (15)
	2010 - 2014 (19)
	2015 - 2019 (27)
	2020 - 2024 (35)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (31)
	Transferases (22)

Symmetry Type

	Asymmetric (52)
	Cyclic (43)
	Dihedral (13)

SCOP Classification

	All alpha proteins (15)
	Alpha and beta proteins (a+b) (26)
	All beta proteins (2)
	Artifacts (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 104 Structures

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1BVC \| pdb_00001bvc	Download File View File

STRUCTURE OF A BILIVERDIN APOMYOGLOBIN COMPLEX (FORM D) AT 118 K

Wagner, U.G., Mueller, N., Schmitzberger, W., Falk, H., Kratky, C.

(1995) J Mol Biology 247: 326-337

Released	1995-07-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Physeter macrocephalus
Macromolecule	APOMYOGLOBIN (protein)
Unique Ligands	BLA, PO4

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1BVD \| pdb_00001bvd	Download File View File

STRUCTURE OF A BILIVERDIN APOMYOGLOBIN COMPLEX (FORM B) AT 98 K

Wagner, U.G., Mueller, N., Schmitzberger, W., Falk, H., Kratky, C.

(1995) J Mol Biology 247: 326-337

Released	1995-07-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Physeter macrocephalus
Macromolecule	APOMYOGLOBIN (protein)
Unique Ligands	BLA

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1HE2 \| pdb_00001he2	Download File View File

Human biliverdin IX beta reductase: NADP/biliverdin IX alpha ternary complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Flavin reductase (NADPH) (protein)
Unique Ligands	BLA, NAP

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1J2C \| pdb_00001j2c	Download File View File

Crystal structure of rat heme oxygenase-1 in complex with biliverdin IXalpha-iron cluster

Sugishima, M., Sakamoto, H., Noguchi, M., Fukuyama, K.

(2003) J Biological Chem 278: 32352-32358

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	Heme Oxygenase-1 (protein)
Unique Ligands	BLA, FE

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1S8C \| pdb_00001s8c	Download File View File

Crystal structure of human heme oxygenase in a complex with biliverdine

Lad, L., Friedman, J., Li, H., Bhaskar, B., Ortiz de Montellano, P.R., Poulos, T.L.

(2004) Biochemistry 43: 3793-3801

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	Heme oxygenase 1 (protein)
Unique Ligands	BLA

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1ZTU \| pdb_00001ztu	Download File View File

Structure of the chromophore binding domain of bacterial phytochrome

Wagner, J.R., Brunzelle, J.S., Forest, K.T., Vierstra, R.D.

(2005) Nature 438: 325-331

Released	2005-11-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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2D1E \| pdb_00002d1e	Download File View File

Crystal structure of PcyA-biliverdin complex

Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.

(2006) Proc Natl Acad Sci U S A 103: 27-32

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, NA

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2UUL \| pdb_00002uul	Download File View File

Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.

Satyanarayana, L., Patel, A., Mishra, S., K Ghosh, P., Suresh, C.G.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Phormidium sp.
Macromolecule	C-PHYCOCYANIN ALPHA CHAIN (protein) C-PHYCOCYANIN BETA CHAIN (protein)
Unique Ligands	BLA, CYC

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2UUM \| pdb_00002uum	Download File View File

Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.

Satyanarayana, L., Patel, A., Mishra, S., K Ghosh, P., Suresh, C.G.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Spirulina sp.
Macromolecule	C-PHYCOCYANIN ALPHA CHAIN (protein) C-PHYCOCYANIN BETA CHAIN (protein)
Unique Ligands	BLA, CYC

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2UUN \| pdb_00002uun	Download File View File

Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.

Satyanarayana, L., Patel, A., Mishra, S., K Ghosh, P., Suresh, C.G.

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Leptolyngbya sp.
Macromolecule	C-PHYCOCYANIN (protein)
Unique Ligands	BLA, CYC

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2VCK \| pdb_00002vck	Download File View File

Structure of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in Complex with the bound Substrate Biliverdin IXa

Dammeyer, T., Hofmann, E., Frankenberg-Dinkel, N.

(2008) J Biological Chem 283: 27547

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	CYANOBACTERIAL PHYCOERYTHROBILIN (protein)
Unique Ligands	BLA

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2VGR \| pdb_00002vgr	Download File View File

Structure of the WT-Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in Complex with the bound Substrate Biliverdin IXa

Dammeyer, T., Hofmann, E., Frankenberg-Dinkel, N.

(2008) J Biological Chem 283: 27547

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	CYANOBACTERIAL PHYCOERYTHROBILIN (protein)
Unique Ligands	BLA

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2VUE \| pdb_00002vue	Download File View File

Human serum albumin complexed with 4Z,15E-bilirubin-IX-alpha

Zunszain, P.A., Ghuman, J., Curry, S.

(2008) J Mol Biology 381: 394

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)
Unique Ligands	BLA

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2X9I \| pdb_00002x9i	Download File View File

Structure of the Mutant D105N of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in complex with bound substrate Biliverdin IXA

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

(2011) Biochem J 433: 469

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	PHYCOBILIN SYNTHASE (protein)
Unique Ligands	BLA, SO4

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2X9J \| pdb_00002x9j	Download File View File

Structure of the Mutant D206N of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in complex with bound substrate Biliverdin IXA

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

(2011) Biochem J 433: 469

Released	2010-11-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	PHYCOERYTHROBILIN SYNTHASE (protein)
Unique Ligands	BLA

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2X9O \| pdb_00002x9o	Download File View File

STRUCTURE OF 15, 16- DIHYDROBILIVERDIN:FERREDOXIN OXIDOREDUCTASE (PebA)

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

(2011) Biochem J 439: 257

Released	2011-03-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Synechococcus sp. WH 8020
Macromolecule	15,16-DIHYDROBILIVERDIN-FERREDOXIN OXIDOREDUCTASE (protein)
Unique Ligands	BLA

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3AJG \| pdb_00003ajg	Download File View File

Crystal structure of PcyA V225D-biliverdin IX alpha complex

Wada, K., Hagiwara, Y., Fukuyama, K.

(2010) Biochem Biophys Res Commun 402: 373-377

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA

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3BRP \| pdb_00003brp	Download File View File

Crystal Structure of C-Phycocyanin from Galdieria sulphuraria

Fromme, R.

To be published

Released	2009-02-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Galdieria sulphuraria
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	BLA

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3C2W \| pdb_00003c2w	Download File View File

Crystal structure of the photosensory core domain of P. aeruginosa bacteriophytochrome PaBphP in the Pfr state

Yang, X., Kuk, J., Moffat, K.

(2008) Proc Natl Acad Sci U S A 105: 14715-14720

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3F0L \| pdb_00003f0l	Download File View File

Crystal structure of oxidized D105N Synechocystis sp. PcyA

Kohler, A.C., Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3F0M \| pdb_00003f0m	Download File View File

Crystal structure of radical D105N Synechocystis sp. PcyA

Kohler, A.C., Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3G6O \| pdb_00003g6o	Download File View File

Crystal structure of P. aeruginosa bacteriophytochrome PaBphP photosensory core domain mutant Q188L

Yang, X., Kuk, J., Moffat, K.

(2009) Proc Natl Acad Sci U S A 106: 15639-15644

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3I95 \| pdb_00003i95	Download File View File

Crystal structure of E76Q mutant PcyA-biliverdin complex

Hagiwara, Y., Sugishima, M., Fukuyama, K.

To be published

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA

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3IBR \| pdb_00003ibr	Download File View File

Crystal Structure of P. aeruginosa Bacteriophytochrome Photosensory Core Module Mutant Q188L in the Mixed Pr/Pfr State

Yang, X., Kuk, J., Moffat, K.

(2009) Proc Natl Acad Sci U S A 106: 15639-15644

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3KVS \| pdb_00003kvs	Download File View File

The high resolution structure of C-Phycocyanin from Galdieria Sulphuraria

Fromme, R., Thangaraj, B., Vanselow, C., Fromme, P.

To be published

Released	2011-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Galdieria sulphuraria
Macromolecule	C-phycocyanin alpha chain (protein) C-phycocyanin beta chain (protein)
Unique Ligands	BLA

1 to 25 of 104 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BVC | pdb_00001bvc

1BVD | pdb_00001bvd

1HE2 | pdb_00001he2

1J2C | pdb_00001j2c

1S8C | pdb_00001s8c

1ZTU | pdb_00001ztu

2D1E | pdb_00002d1e

2UUL | pdb_00002uul

2UUM | pdb_00002uum

2UUN | pdb_00002uun

2VCK | pdb_00002vck

2VGR | pdb_00002vgr

2VUE | pdb_00002vue

2X9I | pdb_00002x9i

2X9J | pdb_00002x9j

2X9O | pdb_00002x9o

3AJG | pdb_00003ajg

3BRP | pdb_00003brp

3C2W | pdb_00003c2w

3F0L | pdb_00003f0l

3F0M | pdb_00003f0m

3G6O | pdb_00003g6o

3I95 | pdb_00003i95

3IBR | pdb_00003ibr

3KVS | pdb_00003kvs