RCSB PDB: Search

1W37 \| pdb_00001w37	Download File View File

2-keto-3-deoxygluconate(KDG) aldolase of Sulfolobus solfataricus

Theodossis, A., Walden, H., Westwick, E.J., Connaris, H., Lamble, H.J., Hough, D.W., Danson, M.J., Taylor, G.L.

(2004) J Biological Chem 279: 43886-43892

Released	2004-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-KETO-3-DEOXY GLUCONATE ALDOLASE (protein)
Unique Ligands	GOL, NA

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1W3I \| pdb_00001w3i	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with pyruvate

Theodossis, A., Walden, H., Westwick, E.J., Connaris, H., Lamble, H.J., Hough, D.W., Danson, M.J., Taylor, G.L.

(2004) J Biological Chem 279: 43886-43892

Released	2004-09-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-KETO-3-DEOXY GLUCONATE ALDOLASE (protein)
Unique Ligands	GOL, PYR

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1W3N \| pdb_00001w3n	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDG

Theodossis, A., Walden, H., Westwick, E.J., Connaris, H., Lamble, H.J., Hough, D.W., Danson, M.J., Taylor, G.L.

(2004) J Biological Chem 279: 43886-43892

Released	2004-09-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-KETO-3-DEOXY GLUCONATE ALDOLASE (protein)
Unique Ligands	GOL, SSH

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1W3T \| pdb_00001w3t	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDGal, D-Glyceraldehyde and pyruvate

Theodossis, A., Walden, H., Westwick, E.J., Connaris, H., Lamble, H.J., Hough, D.W., Danson, M.J., Taylor, G.L.

(2004) J Biological Chem 279: 43886-43892

Released	2004-09-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-KETO-3-DEOXY GLUCONATE ALDOLASE (protein)
Unique Ligands	3GR, GOL, PYR, RSH

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2NUW \| pdb_00002nuw	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure at 1.8 A resolution

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG

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2NUX \| pdb_00002nux	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure in p6522 at 2.5 A resolution

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG

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2NUY \| pdb_00002nuy	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius in complex with pyruvate

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG, PYR

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2YDA \| pdb_00002yda	Download File View File

Sulfolobus sulfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F, A198F variant

Crennell, S.J., Royer, S.F., Angelopoulou, M., Hough, D.W., Danson, M.J., Bull, S.D.

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-KETO-3-DEOXY GLUCONATE ALDOLASE (protein)
Unique Ligands	EPE, GOL, IPA

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6G3Z \| pdb_00006g3z	Download File View File

Sulfolobus sulfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDPG

Crennell, S.J.

(2018) Biochemistry 57: 3797-3806

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	ELE, IPA

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6GSO \| pdb_00006gso	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	EDO, GOL

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6GT8 \| pdb_00006gt8	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-06-26
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	SSH

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6GV2 \| pdb_00006gv2	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F,A198F variant in complex with L-2-keto, 3-deoxy-galactonate

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	EDO, GOL, GXV, SSH

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6H2R \| pdb_00006h2r	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-07-31
Method	X-RAY DIFFRACTION 1.574 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	EDO, GOL, IPA, PGE

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6H2S \| pdb_00006h2s	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant, pyruvate complex

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-07-31
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	GOL, IPA, PEG, PYR

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6H7R \| pdb_00006h7r	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	EDO, GOL

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6H7S \| pdb_00006h7s	Download File View File

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant in complex with L-2-keto-3deoxy-gluconate

Crennell, S.J., Danson, M.J., Royer, S.

To be published

Released	2019-08-14
Method	X-RAY DIFFRACTION 3.202 Å
Organisms	Saccharolobus solfataricus
Macromolecule	2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase (protein)
Unique Ligands	FW2

1W37 | pdb_00001w37

2-keto-3-deoxygluconate(KDG) aldolase of Sulfolobus solfataricus

1W3I | pdb_00001w3i

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with pyruvate

1W3N | pdb_00001w3n

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDG

1W3T | pdb_00001w3t

Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDGal, D-Glyceraldehyde and pyruvate

2NUW | pdb_00002nuw

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure at 1.8 A resolution

2NUX | pdb_00002nux

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure in p6522 at 2.5 A resolution

2NUY | pdb_00002nuy

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius in complex with pyruvate

2YDA | pdb_00002yda

Sulfolobus sulfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F, A198F variant

6G3Z | pdb_00006g3z

Sulfolobus sulfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDPG

6GSO | pdb_00006gso

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant

6GT8 | pdb_00006gt8

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant

6GV2 | pdb_00006gv2

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F,A198F variant in complex with L-2-keto, 3-deoxy-galactonate

6H2R | pdb_00006h2r

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant

6H2S | pdb_00006h2s

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant, pyruvate complex

6H7R | pdb_00006h7r

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant

6H7S | pdb_00006h7s

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant in complex with L-2-keto-3deoxy-gluconate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1W37 | pdb_00001w37

1W3I | pdb_00001w3i

1W3N | pdb_00001w3n

1W3T | pdb_00001w3t

2NUW | pdb_00002nuw

2NUX | pdb_00002nux

2NUY | pdb_00002nuy

2YDA | pdb_00002yda

6G3Z | pdb_00006g3z

6GSO | pdb_00006gso

6GT8 | pdb_00006gt8

6GV2 | pdb_00006gv2

6H2R | pdb_00006h2r

6H2S | pdb_00006h2s

6H7R | pdb_00006h7r

6H7S | pdb_00006h7s