RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 3.6.5.3

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Gallus gallus (26)
	Homo sapiens (17)
	synthetic construct (4)

Taxonomy

	Eukaryota (43)
	other sequences (4)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	0.5 - 1.0 (11)
	1.0 - 1.5 (13)
	1.5 - 2.0 (18)
	2.0 - 2.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (42)

Enzyme Classification Name

	Transferases (35)
	Hydrolases (8)

Symmetry Type

	Asymmetric (36)
	Cyclic (7)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a+b) (4)

AllSelected

1 to 25 of 43 Structures

Page 1 of 2

Sort by

Explore in 3D

6S7N \| pdb_00006s7n	Download File View File

Crystal structure of orthorhombic lysozyme grown at pH 5.5 with a 26% of solvent content

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

(2019) Acta Crystallogr F Struct Biol Commun 75: 687-696

Released	2019-11-20
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	SO4

Explore in 3D

6SYC \| pdb_00006syc	Download File View File

Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

(2020) Acta Crystallogr D Struct Biol 76: 845-856

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	CL, IMD, LYE, NA

Explore in 3D

6SYD \| pdb_00006syd	Download File View File

Crystal structure of the lysozyme in presence of bromophenol blue at pH 5.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

(2020) Acta Crystallogr D Struct Biol 76: 845-856

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	LYE, NA

Explore in 3D

6SYE \| pdb_00006sye	Download File View File

Crystal structure of orthorhombic lysozyme in presence of the dye bromophenol blue at pH 7.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

(2020) Acta Crystallogr D Struct Biol 76: 845-856

Released	2020-09-09
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, LYE

Explore in 3D

6XVM \| pdb_00006xvm	Download File View File

Crystal structure of c-Src SH3 domain without ATCUN motif: monomer 2

Camara-Artigas, A., Plaza-Garrido, M.

(2020) J Biol Inorg Chem 25: 621-634

Released	2020-04-22
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	GOL

Explore in 3D

6XVN \| pdb_00006xvn	Download File View File

Crystal structure of c-Src SH3 domain without ATCUN motif: monomer 1

Camara-Artigas, A., Plaza-Garrido, M.

(2020) J Biol Inorg Chem 25: 621-634

Released	2020-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)

Explore in 3D

6XVO \| pdb_00006xvo	Download File View File

Crystal structure of the intertwined dimer of the c-Src SH3 domain without ATCUN motif

Camara-Artigas, A., Plaza-Garrido, M.

(2020) J Biol Inorg Chem 25: 621-634

Released	2020-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	PEG, PGE

Explore in 3D

7A2J \| pdb_00007a2j	Download File View File

Crystal structure of the Fyn SH3 domain in space group C21 at pH 7.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	NA

Explore in 3D

7A2K \| pdb_00007a2k	Download File View File

Crystal structure of the Fyn SH3 domain in space group P1 at pH 7.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	NA

Explore in 3D

7A2L \| pdb_00007a2l	Download File View File

Crystal structure of the Fyn SH3 domain mutant E129Q in space group C21 at pH 4.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	FMT, NA

Explore in 3D

7A2M \| pdb_00007a2m	Download File View File

Crystal structure of the Fyn SH3 domain A95S-D99T mutant in C21 space group

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	FMT, NA, SO4

Explore in 3D

7A2N \| pdb_00007a2n	Download File View File

Crystal structure of the Fyn SH3 domain A95S-D99T mutant in space group P21

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	FMT, NA

Explore in 3D

7A2O \| pdb_00007a2o	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	PGE

Explore in 3D

7A2P \| pdb_00007a2p	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 5.0 with PEG

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	PGE

Explore in 3D

7A2Q \| pdb_00007a2q	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 3.0 with PEG

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	PG4, SO4

Explore in 3D

7A2R \| pdb_00007a2r	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 6.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)

Explore in 3D

7A2S \| pdb_00007a2s	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 5.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)

Explore in 3D

7A2T \| pdb_00007a2t	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	ACT

Explore in 3D

7A2U \| pdb_00007a2u	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T at pH 4.5

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)
Unique Ligands	ACT

Explore in 3D

7A2V \| pdb_00007a2v	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E129Q at pH 4.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Fyn (protein)

Explore in 3D

7A2W \| pdb_00007a2w	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 3.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein kinase Fyn (protein) VSL12 (protein)
Unique Ligands	CIT

Explore in 3D

7A2X \| pdb_00007a2x	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 5.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.92 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein kinase Fyn (protein) VSL12 high affinity synthetic peptide acetylated in the amino-terminus (protein)

Explore in 3D

7A2Y \| pdb_00007a2y	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 4.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein kinase Fyn (protein) VSL12 (protein)

Explore in 3D

7A2Z \| pdb_00007a2z	Download File View File

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 6.0

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein kinase Fyn (protein) VSL12 (protein)

Explore in 3D

7A30 \| pdb_00007a30	Download File View File

Intertwined dimer of the c-Src SH3 domain mutant Q128E

Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

To be published

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Gallus gallus
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	PEG, PGE, SO4

1 to 25 of 43 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6S7N | pdb_00006s7n

6SYC | pdb_00006syc

6SYD | pdb_00006syd

6SYE | pdb_00006sye

6XVM | pdb_00006xvm

6XVN | pdb_00006xvn

6XVO | pdb_00006xvo

7A2J | pdb_00007a2j

7A2K | pdb_00007a2k

7A2L | pdb_00007a2l

7A2M | pdb_00007a2m

7A2N | pdb_00007a2n

7A2O | pdb_00007a2o

7A2P | pdb_00007a2p

7A2Q | pdb_00007a2q

7A2R | pdb_00007a2r

7A2S | pdb_00007a2s

7A2T | pdb_00007a2t

7A2U | pdb_00007a2u

7A2V | pdb_00007a2v

7A2W | pdb_00007a2w

7A2X | pdb_00007a2x

7A2Y | pdb_00007a2y

7A2Z | pdb_00007a2z

7A30 | pdb_00007a30