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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.7.1.19

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Arabidopsis thaliana (4)
	Synechococcus elongatus PCC 6301 (2)
	Cereibacter sphaeroides (1)
	Chlamydomonas reinhardtii (1)
	Methanospirillum hungatei JF-1 (1)
	Synechococcus elongatus PCC 7942 = FACHB-805 (1)
	Thermosynechococcus vestitus BP-1 (1)

Taxonomy

	Bacteria (5)
	Eukaryota (5)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	2.0 - 2.5 (3)
	2.5 - 3.0 (6)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (1)
	2015 - 2019 (6)
	2020 - 2024 (4)

Enzyme Classification Name

	Transferases (11)
	Oxidoreductases (2)

Symmetry Type

	Cyclic (7)
	Asymmetric (4)
	Dihedral (2)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1 to 11 of 11 Structures

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1A7J \| pdb_00001a7j	Download File View File

PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES

Harrison, D.H.T., Runquist, J., Holub, A., Miziorko, H.

(1998) Biochemistry 37: 5074-5085

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOSPHORIBULOKINASE (protein)
Unique Ligands	SO4

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5B3F \| pdb_00005b3f	Download File View File

Crystal structure of phosphoribulokinase from Methanospirillum hungatei

Matsumura, H., Ashida, H.

(2017) Nat Commun 8: 14007-14007

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanospirillum hungatei JF-1
Macromolecule	Phosphoribulokinase/uridine kinase (protein)
Unique Ligands	SO4

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6GVE \| pdb_00006gve	Download File View File

GAPDH-CP12-PRK complex

McFarlane, C.R., Shah, N., Bubeck, D., Murray, J.W.

(2019) Proc Natl Acad Sci U S A 116: 20984-20990

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	CP12 polypeptide (protein) Glyceraldehyde-3-phosphate dehydrogenase (protein) Phosphoribulokinase (protein)
Unique Ligands	NAD

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6H7G \| pdb_00006h7g	Download File View File

Crystal structure of redox-sensitive phosphoribulokinase (PRK) from the green algae Chlamydomonas reinhardtii

Fermani, S., Sparla, F., Gurrieri, L., Demitri, N., Polentarutti, M., Falini, G., Trost, P., Lemaire, S.D.

(2019) Proc Natl Acad Sci U S A 116: 8048-8053

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Phosphoribulokinase, chloroplastic (protein)
Unique Ligands	SO4

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6H7H \| pdb_00006h7h	Download File View File

Crystal structure of redox-sensitive phosphoribulokinase (PRK) from Arabidopsis thaliana

Fermani, S., Sparla, F., Gurrieri, L., Falini, G., Trost, P.

(2019) Proc Natl Acad Sci U S A 116: 8048-8053

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.471 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoribulokinase, chloroplastic (protein)

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6HZK \| pdb_00006hzk	Download File View File

Crystal structure of redox-inhibited phosphoribulokinase from Synechococcus sp. (strain PCC 6301)

Wilson, R.H., Bracher, A., Hartl, F.U., Hayer-Hartl, M.

(2019) Acta Crystallogr F Struct Biol Commun 75: 278-289

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Synechococcus elongatus PCC 6301
Macromolecule	Phosphoribulokinase (protein)

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6HZL \| pdb_00006hzl	Download File View File

Crystal structure of redox-inhibited phosphoribulokinase from Synechococcus sp. (strain PCC 6301), osmate derivative

Wilson, R.H., Bracher, A., Hartl, F.U., Hayer-Hartl, M.

(2019) Acta Crystallogr F Struct Biol Commun 75: 278-289

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Synechococcus elongatus PCC 6301
Macromolecule	Phosphoribulokinase (protein)
Unique Ligands	OS

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6KEV \| pdb_00006kev	Download File View File

Reduced phosphoribulokinase from Synechococcus elongatus PCC 7942 complexed with adenosine diphosphate and glucose 6-phosphate

Yu, A., Xie, Y., Li, M.

(2020) Plant Cell 32: 1556-1573

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.5061389246 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Phosphoribulokinase (protein)
Unique Ligands	ADP, DTT, G6P

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6KEW \| pdb_00006kew	Download File View File

Crystal structure of oxidized phosphoribulokinase from Arabidopsis thaliana

Yu, A., Xie, Y., Li, M.

(2020) Plant Cell 32: 1556-1573

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoribulokinase (protein)

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6KEX \| pdb_00006kex	Download File View File

Crystal structure of reduced phosphoribulokinase from Arabidopsis thaliana

Yu, A., Xie, Y., Li, M.

(2020) Plant Cell 32: 1556-1573

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoribulokinase (protein)

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6KEZ \| pdb_00006kez	Download File View File

Crystal structure of GAPDH/CP12/PRK complex from Arabidopsis thaliana

Yu, A., Xie, Y., Li, M.

(2020) Plant Cell 32: 1556-1573

Released	2020-05-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Calvin cycle protein CP12-2 (protein) Glyceraldehyde-3-phosphate dehydrogenase GAPA1 (protein) Phosphoribulokinase (protein)
Unique Ligands	NAD

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A7J | pdb_00001a7j

PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES

5B3F | pdb_00005b3f

Crystal structure of phosphoribulokinase from Methanospirillum hungatei

6GVE | pdb_00006gve

GAPDH-CP12-PRK complex

6H7G | pdb_00006h7g

Crystal structure of redox-sensitive phosphoribulokinase (PRK) from the green algae Chlamydomonas reinhardtii

6H7H | pdb_00006h7h

Crystal structure of redox-sensitive phosphoribulokinase (PRK) from Arabidopsis thaliana

6HZK | pdb_00006hzk

Crystal structure of redox-inhibited phosphoribulokinase from Synechococcus sp. (strain PCC 6301)

6HZL | pdb_00006hzl

Crystal structure of redox-inhibited phosphoribulokinase from Synechococcus sp. (strain PCC 6301), osmate derivative

6KEV | pdb_00006kev

Reduced phosphoribulokinase from Synechococcus elongatus PCC 7942 complexed with adenosine diphosphate and glucose 6-phosphate

6KEW | pdb_00006kew

Crystal structure of oxidized phosphoribulokinase from Arabidopsis thaliana

6KEX | pdb_00006kex

Crystal structure of reduced phosphoribulokinase from Arabidopsis thaliana

6KEZ | pdb_00006kez

Crystal structure of GAPDH/CP12/PRK complex from Arabidopsis thaliana

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A7J | pdb_00001a7j

5B3F | pdb_00005b3f

6GVE | pdb_00006gve

6H7G | pdb_00006h7g

6H7H | pdb_00006h7h

6HZK | pdb_00006hzk

6HZL | pdb_00006hzl

6KEV | pdb_00006kev

6KEW | pdb_00006kew

6KEX | pdb_00006kex

6KEZ | pdb_00006kez