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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.6.1.54

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (17)
	Saccharomyces cerevisiae (1)

Taxonomy

Eukaryota (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (12)

Enzyme Classification Name

Transferases (17)

Symmetry Type

	Cyclic (17)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 18 of 18 Structures

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Explore in 3D

2ONB \| pdb_00002onb	Download File View File

Human Thymidylate Synthase at low salt conditions with PDPA bound

Lovelace, L.L., Gibson, L.M., Lebioda, L.

(2007) Biochemistry 46: 2823-2830

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthetase (protein)
Unique Ligands	7PA, EDO, SO4

Explore in 3D

2RD8 \| pdb_00002rd8	Download File View File

Human Thymidylate Synthase Stabilized in Active Conformation by R163K Mutation: Asymmetry and Reactivity of Cys195

Gibson, L.M., Lovelace, L.L., Lebioda, L.

(2008) Biochemistry 47: 4636-4643

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	BME, PO4

Explore in 3D

2RDA \| pdb_00002rda	Download File View File

Human Thymidylate Synthase Stabilized in Active Conformation by R163K Mutation: Asymmetry and Reactivity of Cys195

Gibson, L.M., Lovelace, L.L., Lebioda, L.

(2008) Biochemistry 47: 4636-4643

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	BME, PO4

Explore in 3D

3D6I \| pdb_00003d6i	Download File View File

Structure of the Thioredoxin-like Domain of Yeast Glutaredoxin 3

Lebioda, L., Gibson, L.M., Dingra, N.N., Outten, C.E.

(2008) Acta Crystallogr D Biol Crystallogr 64: 927-932

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Monothiol glutaredoxin-3 (protein)
Unique Ligands	SO4

Explore in 3D

3EAW \| pdb_00003eaw	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, SO4

Explore in 3D

3EBU \| pdb_00003ebu	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, SO4

Explore in 3D

3ED7 \| pdb_00003ed7	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

3EDW \| pdb_00003edw	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

3EF9 \| pdb_00003ef9	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

3EGY \| pdb_00003egy	Download File View File

Crystal Structure of Human Thymidyalte Synthase A191K with Loop 181-197 stabilized in the inactive conformation

Lovelace, L.L., Gibson, L.M., Johnson, S.R., Berger, S.H., Lebioda, L.

(2009) Protein Sci 18: 1628-1636

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, SO4

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3EHI \| pdb_00003ehi	Download File View File

Crystal Structure of Human Thymidyalte Synthase M190K with Loop 181-197 stabilized in the inactive conformation

Lovelace, L.L., Gibson, L.M., Johnson, S.R., Berger, S.H., Lebioda, L.

(2009) Protein Sci 18: 1628-1636

Released	2009-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, SO4

Explore in 3D

3EJL \| pdb_00003ejl	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	PO4, UFP

Explore in 3D

3GG5 \| pdb_00003gg5	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Lebioda, L.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	PO4, SO4

Explore in 3D

3GH0 \| pdb_00003gh0	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Lebioda, L.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

3GH2 \| pdb_00003gh2	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Lebioda, L.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

3H9K \| pdb_00003h9k	Download File View File

Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry

Gibson, L.M., Lovelace, L.L., Lebioda, L.

(2011) Acta Crystallogr D Biol Crystallogr 67: 60-66

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, PO4, UFP

Explore in 3D

3HB8 \| pdb_00003hb8	Download File View File

Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry

Gibson, L.M., Lovelace, L.L., Lebioda, L.

(2011) Acta Crystallogr D Biol Crystallogr 67: 60-66

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, PO4, UMP

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3OB7 \| pdb_00003ob7	Download File View File

Human Thymidylate Synthase R163K with Cys 195 covalently modified by Glutathione

Gibson, L.M., Celeste, L.R., Lovelace, L.L., Lebioda, L.

(2011) Acta Crystallogr D Biol Crystallogr 67: 60-66

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	GSH, PO4

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2ONB | pdb_00002onb

Human Thymidylate Synthase at low salt conditions with PDPA bound

2RD8 | pdb_00002rd8

Human Thymidylate Synthase Stabilized in Active Conformation by R163K Mutation: Asymmetry and Reactivity of Cys195

2RDA | pdb_00002rda

Human Thymidylate Synthase Stabilized in Active Conformation by R163K Mutation: Asymmetry and Reactivity of Cys195

3D6I | pdb_00003d6i

Structure of the Thioredoxin-like Domain of Yeast Glutaredoxin 3

3EAW | pdb_00003eaw

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3EBU | pdb_00003ebu

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3ED7 | pdb_00003ed7

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3EDW | pdb_00003edw

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3EF9 | pdb_00003ef9

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3EGY | pdb_00003egy

Crystal Structure of Human Thymidyalte Synthase A191K with Loop 181-197 stabilized in the inactive conformation

3EHI | pdb_00003ehi

Crystal Structure of Human Thymidyalte Synthase M190K with Loop 181-197 stabilized in the inactive conformation

3EJL | pdb_00003ejl

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3GG5 | pdb_00003gg5

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3GH0 | pdb_00003gh0

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3GH2 | pdb_00003gh2

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

3H9K | pdb_00003h9k

Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry

3HB8 | pdb_00003hb8

Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry

3OB7 | pdb_00003ob7

Human Thymidylate Synthase R163K with Cys 195 covalently modified by Glutathione

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2ONB | pdb_00002onb

2RD8 | pdb_00002rd8

2RDA | pdb_00002rda

3D6I | pdb_00003d6i

3EAW | pdb_00003eaw

3EBU | pdb_00003ebu

3ED7 | pdb_00003ed7

3EDW | pdb_00003edw

3EF9 | pdb_00003ef9

3EGY | pdb_00003egy

3EHI | pdb_00003ehi

3EJL | pdb_00003ejl

3GG5 | pdb_00003gg5

3GH0 | pdb_00003gh0

3GH2 | pdb_00003gh2

3H9K | pdb_00003h9k

3HB8 | pdb_00003hb8

3OB7 | pdb_00003ob7