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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.5.1.113

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (6)
	Mycobacterium tuberculosis H37Rv (5)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (4)
	2015 - 2019 (7)

Enzyme Classification Name

Transferases (11)

Symmetry Type

	Cyclic (10)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (11)
	Artifacts (4)

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1 to 11 of 11 Structures

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Explore in 3D

3DKI \| pdb_00003dki	Download File View File

2.1 A X-ray structure of CysM (Rv1336) from Mycobacterium tuberculosis an O-phosphoserine dependent cysteine synthase

Agren, D., Schnell, R., Schneider, G.

(2008) J Biological Chem 283: 31567-31574

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cysteine synthase B (protein)
Unique Ligands	NA

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3DWG \| pdb_00003dwg	Download File View File

Crystal structure of a sulfur carrier protein complex found in the cysteine biosynthetic pathway of Mycobacterium tuberculosis

Jurgenson, C.T., Burns, K.E., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 10354-10364

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	9.5 kDa culture filtrate antigen cfp10A (protein) Cysteine synthase B (protein)
Unique Ligands	PLP

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3DWI \| pdb_00003dwi	Download File View File

Crystal structure of Mycobacterium tuberculosis CysM, the cysteine synthase B

Jurgenson, C.T., Burns, K.E., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 10354-10364

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Cysteine synthase B (protein)
Unique Ligands	PLP, SO4

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3FGP \| pdb_00003fgp	Download File View File

2.05 a Crystal Structure of CysM from Mycobacterium Tuberculosis - Open and Closed Conformations

Agren, D., Schnell, R., Schneider, G.

(2009) FEBS Lett 583: 330-336

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cysteine synthase B (protein)

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5I6D \| pdb_00005i6d	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 5 [3-(3-(p-Tolyl)ureido) benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	AU6, GOL, PLP

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5I7A \| pdb_00005i7a	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 1 [3-(3-(3,4-Dichlorophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68Q, PLP

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5I7H \| pdb_00005i7h	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 6 [3-(3-(4-Bromophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68V, CL, PLP

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5I7O \| pdb_00005i7o	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 7 [3-(3-(4-Chlorophenyl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	PLP, S16

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5I7R \| pdb_00005i7r	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 2 [3-(3-([1,1'-biphenyl]-3-yl)ureido)benzoic acid]

Schnell, R., Maric, S., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	68W, ACT, PLP

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5IW8 \| pdb_00005iw8	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 4 [5-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

Brunner, K., Schnell, R., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	6EC, NA, PLP

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5IWC \| pdb_00005iwc	Download File View File

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 3 [4-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

Schnell, R., Maric, S., Lindqvist, Y., Schneider, G.

(2016) J Med Chem 59: 6848-6859

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	O-phosphoserine sulfhydrylase (protein)
Unique Ligands	6EQ, PLP

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3DKI | pdb_00003dki

2.1 A X-ray structure of CysM (Rv1336) from Mycobacterium tuberculosis an O-phosphoserine dependent cysteine synthase

3DWG | pdb_00003dwg

Crystal structure of a sulfur carrier protein complex found in the cysteine biosynthetic pathway of Mycobacterium tuberculosis

3DWI | pdb_00003dwi

Crystal structure of Mycobacterium tuberculosis CysM, the cysteine synthase B

3FGP | pdb_00003fgp

2.05 a Crystal Structure of CysM from Mycobacterium Tuberculosis - Open and Closed Conformations

5I6D | pdb_00005i6d

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 5 [3-(3-(p-Tolyl)ureido) benzoic acid]

5I7A | pdb_00005i7a

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 1 [3-(3-(3,4-Dichlorophenyl)ureido)benzoic acid]

5I7H | pdb_00005i7h

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 6 [3-(3-(4-Bromophenyl)ureido)benzoic acid]

5I7O | pdb_00005i7o

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 7 [3-(3-(4-Chlorophenyl)ureido)benzoic acid]

5I7R | pdb_00005i7r

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 2 [3-(3-([1,1'-biphenyl]-3-yl)ureido)benzoic acid]

5IW8 | pdb_00005iw8

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 4 [5-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

5IWC | pdb_00005iwc

Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 3 [4-(3-([1,1'-Biphenyl]-3-yl)ureido)-2-hydroxybenzoic acid]

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3DKI | pdb_00003dki

3DWG | pdb_00003dwg

3DWI | pdb_00003dwi

3FGP | pdb_00003fgp

5I6D | pdb_00005i6d

5I7A | pdb_00005i7a

5I7H | pdb_00005i7h

5I7O | pdb_00005i7o

5I7R | pdb_00005i7r

5IW8 | pdb_00005iw8

5IWC | pdb_00005iwc