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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.1.1.44

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Mycolicibacterium smegmatis (11)
	Mycobacterium tuberculosis (6)

Taxonomy

Bacteria (17)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (4)
	2020 - 2024 (6)

Enzyme Classification Name

Transferases (17)

Symmetry Type

Asymmetric (17)

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1 to 17 of 17 Structures

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4PIM \| pdb_00004pim	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD, apo form

Vit, A., Seebeck, F.P., Blankenfeldt, W.

(2015) Chembiochem 16: 119-125

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine-specific methyltransferase EgtD (protein)
Unique Ligands	ACT

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4PIN \| pdb_00004pin	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine

Vit, A., Seebeck, F.P., Blankenfeldt, W.

(2015) Chembiochem 16: 119-125

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine-specific methyltransferase EgtD (protein)
Unique Ligands	AVI, PO4

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4PIO \| pdb_00004pio	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine and SAH

Vit, A., Seebeck, F.P., Blankenfeldt, W.

(2015) Chembiochem 16: 119-125

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.506 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine-specific methyltransferase EgtD (protein)
Unique Ligands	AVI, CL, MG, SAH

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4PIP \| pdb_00004pip	Download File View File

Engineered EgtD variant EgtD-M252V,E282A in complex with tryptophan and SAH

Vit, A., Seebeck, F.P., Blankenfeldt, W.

(2015) Chembiochem 16: 119-125

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine-specific methyltransferase EgtD (protein)
Unique Ligands	CL, MG, SAH, TRP

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4UY5 \| pdb_00004uy5	Download File View File

Crystal structure of Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

Jeong, J.H., Kim, Y.G.

(2014) Biochem Biophys Res Commun 452: 1098

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD (protein)
Unique Ligands	ACT, IMD

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4UY6 \| pdb_00004uy6	Download File View File

Crystal structure of Histidine and SAH bound Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

Jeong, J.H., Kim, Y.G.

(2014) Biochem Biophys Res Commun 452: 1098

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD (protein)
Unique Ligands	HIS, SAH, TRS

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4UY7 \| pdb_00004uy7	Download File View File

Crystal structure of Histidine bound Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

Jeong, J.H., Kim, Y.G.

(2014) Biochem Biophys Res Commun 452: 1098

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.306 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD (protein)
Unique Ligands	HIS

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6FNQ \| pdb_00006fnq	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N,N-trimethylhistidine (hercynine)

Vit, A., Blankenfeldt, W., Seebeck, F.P.

(2018) ACS Chem Biol 13: 1333-1342

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	AVJ, GOL, MG

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6FNR \| pdb_00006fnr	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with chlorohistidine

Vit, A., Blankenfeldt, W., Seebeck, F.P.

(2018) ACS Chem Biol 13: 1333-1342

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	DYT, GOL, MG, PG4

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6FNS \| pdb_00006fns	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with morpholinohistidine

Vit, A., Blankenfeldt, W., Seebeck, F.P.

(2018) ACS Chem Biol 13: 1333-1342

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	DY8, GOL

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6FNT \| pdb_00006fnt	Download File View File

Ergothioneine-biosynthetic methyltransferase EgtD in complex with pyrrolidinohistidine

Vit, A., Blankenfeldt, W., Seebeck, F.P.

(2018) ACS Chem Biol 13: 1333-1342

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	AVO

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7SCF \| pdb_00007scf	Download File View File

M. tb EgtD in complex with HD2

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	8YI, GOL, PEG, PO4

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7SEW \| pdb_00007sew	Download File View File

M. tb EgtD in complex with HD6

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	A1I, GOL, PDO

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7SEX \| pdb_00007sex	Download File View File

M. tb EgtD in complex with TGX221

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	93I, GOL

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7SEY \| pdb_00007sey	Download File View File

M. tb EgtD in complex with SGH

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	92W

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7SF4 \| pdb_00007sf4	Download File View File

M. tb EgtD in complex with imatinib

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	EDO, GOL, XDK

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7SF5 \| pdb_00007sf5	Download File View File

M. tb EgtD in complex with HD3

Sudasinghe, T.D., Ronning, D.R.

(2021) Sci Rep 11: 22240-22240

Released	2021-12-01
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Histidine N-alpha-methyltransferase (protein)
Unique Ligands	95I

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4PIM | pdb_00004pim

Ergothioneine-biosynthetic methyltransferase EgtD, apo form

4PIN | pdb_00004pin

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine

4PIO | pdb_00004pio

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine and SAH

4PIP | pdb_00004pip

Engineered EgtD variant EgtD-M252V,E282A in complex with tryptophan and SAH

4UY5 | pdb_00004uy5

Crystal structure of Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

4UY6 | pdb_00004uy6

Crystal structure of Histidine and SAH bound Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

4UY7 | pdb_00004uy7

Crystal structure of Histidine bound Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis

6FNQ | pdb_00006fnq

Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N,N-trimethylhistidine (hercynine)

6FNR | pdb_00006fnr

Ergothioneine-biosynthetic methyltransferase EgtD in complex with chlorohistidine

6FNS | pdb_00006fns

Ergothioneine-biosynthetic methyltransferase EgtD in complex with morpholinohistidine

6FNT | pdb_00006fnt

Ergothioneine-biosynthetic methyltransferase EgtD in complex with pyrrolidinohistidine

7SCF | pdb_00007scf

M. tb EgtD in complex with HD2

7SEW | pdb_00007sew

M. tb EgtD in complex with HD6

7SEX | pdb_00007sex

M. tb EgtD in complex with TGX221

7SEY | pdb_00007sey

M. tb EgtD in complex with SGH

7SF4 | pdb_00007sf4

M. tb EgtD in complex with imatinib

7SF5 | pdb_00007sf5

M. tb EgtD in complex with HD3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4PIM | pdb_00004pim

4PIN | pdb_00004pin

4PIO | pdb_00004pio

4PIP | pdb_00004pip

4UY5 | pdb_00004uy5

4UY6 | pdb_00004uy6

4UY7 | pdb_00004uy7

6FNQ | pdb_00006fnq

6FNR | pdb_00006fnr

6FNS | pdb_00006fns

6FNT | pdb_00006fnt

7SCF | pdb_00007scf

7SEW | pdb_00007sew

7SEX | pdb_00007sex

7SEY | pdb_00007sey

7SF4 | pdb_00007sf4

7SF5 | pdb_00007sf5