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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sindbis virus"

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Sindbis virus (19)
	Saccharomyces cerevisiae (1)

Taxonomy

	Riboviria (19)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (4)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (3)

Symmetry Type

	Asymmetric (11)
	Icosahedral (5)
	Cyclic (3)

SCOP Classification

	All beta proteins (11)
	Low resolution protein structures (1)

AllSelected

1 to 19 of 19 Structures

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1KXA \| pdb_00001kxa	Download File View File

SINDBIS VIRUS CAPSID, (WILD-TYPE) RESIDUES 106-264, TETRAGONAL CRYSTAL FORM

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-11-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1KXB \| pdb_00001kxb	Download File View File

SINDBIS VIRUS CAPSID (S215A MUTANT), TETRAGONAL CRYSTAL FORM

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1KXC \| pdb_00001kxc	Download File View File

SINDBIS VIRUS CAPSID (N190K MUTANT), TETRAGONAL CRYSTAL FORM

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-11-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1KXD \| pdb_00001kxd	Download File View File

SINDBIS VIRUS CAPSID (N222L MUTANT), TETRAGONAL CRYSTAL FORM

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-11-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1KXE \| pdb_00001kxe	Download File View File

SINDBIS VIRUS CAPSID (Y180S, E183G DOUBLE MUTANT), TETRAGONAL CRYSTAL FORM

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-11-08
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1KXF \| pdb_00001kxf	Download File View File

SINDBIS VIRUS CAPSID, (WILD-TYPE) RESIDUES 1-264, TETRAGONAL CRYSTAL FORM (FORM II)

Choi, H.-K., Rossmann, M.G.

(1996) J Mol Biology 262: 151-167

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1LD4 \| pdb_00001ld4	Download File View File

Placement of the Structural Proteins in Sindbis Virus

Zhang, W., Mukhopadhyay, S., Pletnev, S.V., Baker, T.S., Kuhn, R.J., Rossmann, M.G.

(2002) J Virol 76: 11645-11658

Released	2002-11-04
Method	ELECTRON MICROSCOPY 11.4 Å
Organisms	Saccharomyces cerevisiae Sindbis virus
Macromolecule	Coat protein C (protein) GENERAL CONTROL PROTEIN GCN4 (protein) Spike glycoprotein E1 (protein)
Unique Ligands	UNX

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1SVP \| pdb_00001svp	Download File View File

SINDBIS VIRUS CAPSID PROTEIN

Lee, S., Rossmann, M.G.

(1996) Structure 4: 531-541

Released	1996-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

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1WYK \| pdb_00001wyk	Download File View File

SINDBIS VIRUS CAPSID PROTEIN (114-264)

Lee, S., Kuhn, R.J., Rossmann, M.G.

(1998) Proteins 33: 311-317

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)
Unique Ligands	DIO, FOR

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1Z8Y \| pdb_00001z8y	Download File View File

Mapping the E2 Glycoprotein of Alphaviruses

Mukhopadhyay, S., Zhang, W., Gabler, S., Chipman, P.R., Strauss, E.G., Strauss, J.H., Baker, T.S., Kuhn, R.J., Rossmann, M.G.

(2006) Structure 14: 63-73

Released	2006-02-07
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Sindbis virus
Macromolecule	Capsid protein C (protein) Spike glycoprotein E1 (protein) Spike glycoprotein E2 (protein)

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2SNV \| pdb_00002snv	Download File View File

THE REFINED STRUCTURE OF SINDBIS VIRUS CORE PROTEIN IN COMPARISON WITH OTHER CHYMOTRYPSIN-LIKE SERINE PROTEINASE STRUCTURES

Tong, L., Rossmann, M.G.

(1993) J Mol Biology 230: 228-247

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS COAT PROTEIN (protein)

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2SNW \| pdb_00002snw	Download File View File

SINDBIS VIRUS CAPSID PROTEIN, TYPE3 CRYSTAL FORM

Choi, H.-K., Lee, S., Zhang, Y.-P., Mckinney, B.R., Wengler, G., Rossmann, M.G., Kuhn, R.J.

(1996) J Mol Biology 262: 151-167

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sindbis virus
Macromolecule	COAT PROTEIN C (protein)

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3J0F \| pdb_00003j0f	Download File View File

Sindbis virion

Tang, J., Jose, J., Zhang, W., Chipman, P., Kuhn, R.J., Baker, T.S.

(2011) J Mol Biology 414: 442-459

Released	2011-10-12
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Sindbis virus
Macromolecule	Capsid protein (protein) E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein)

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3MUU \| pdb_00003muu	Download File View File

Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH

Li, L., Jose, J., Xiang, Y., Kuhn, R.J., Rossmann, M.G.

(2010) Nature 468: 705-708

Released	2010-11-24
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Sindbis virus
Macromolecule	Structural polyprotein (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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3MUW \| pdb_00003muw	Download File View File

Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus

Li, L., Jose, J., Xiang, Y., Kuhn, R.J., Rossmann, M.G.

(2010) Nature 468: 705-708

Released	2010-11-24
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Sindbis virus
Macromolecule	Structural polyprotein (protein)

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4GUA \| pdb_00004gua	Download File View File

Alphavirus P23pro-zbd

Shin, G., Yost, S., Miller, M., Marcotrigiano, J.

(2012) Proc Natl Acad Sci U S A 109: 16534-16539

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.854 Å
Organisms	Sindbis virus
Macromolecule	Non-structural polyprotein (protein)
Unique Ligands	MES, SO4, ZN

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6IMM \| pdb_00006imm	Download File View File

Cryo-EM structure of an alphavirus, Sindbis virus

Zhang, X., Ma, J., Chen, L.

(2018) Nat Commun 9: 5326-5326

Released	2019-03-13
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Sindbis virus
Macromolecule	Assembly protein E3 (protein) Spike glycoprotein E1 (protein) Spike glycoprotein E2 (protein)
Unique Ligands	8K6

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7VB4 \| pdb_00007vb4	Download File View File

A crystal structure of alphavirus nonstructural protein 4 (nsP4) reveals an intrinsically dynamic RNA-dependent RNA polymerase

Tan, Y.B., Luo, D.

(2022) Nucleic Acids Res 50: 1000-1016

Released	2022-02-16
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Sindbis virus
Macromolecule	RNA-directed RNA polymerase nsP4 (protein)
Unique Ligands	GOL, MG

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7VW5 \| pdb_00007vw5	Download File View File

Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold

Tan, Y.B., Luo, D.

(2022) Nucleic Acids Res 50: 1000-1016

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sindbis virus
Macromolecule	RNA-directed RNA polymerase nsP4 (protein)
Unique Ligands	MG

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1KXA | pdb_00001kxa

SINDBIS VIRUS CAPSID, (WILD-TYPE) RESIDUES 106-264, TETRAGONAL CRYSTAL FORM

1KXB | pdb_00001kxb

SINDBIS VIRUS CAPSID (S215A MUTANT), TETRAGONAL CRYSTAL FORM

1KXC | pdb_00001kxc

SINDBIS VIRUS CAPSID (N190K MUTANT), TETRAGONAL CRYSTAL FORM

1KXD | pdb_00001kxd

SINDBIS VIRUS CAPSID (N222L MUTANT), TETRAGONAL CRYSTAL FORM

1KXE | pdb_00001kxe

SINDBIS VIRUS CAPSID (Y180S, E183G DOUBLE MUTANT), TETRAGONAL CRYSTAL FORM

1KXF | pdb_00001kxf

SINDBIS VIRUS CAPSID, (WILD-TYPE) RESIDUES 1-264, TETRAGONAL CRYSTAL FORM (FORM II)

1LD4 | pdb_00001ld4

Placement of the Structural Proteins in Sindbis Virus

1SVP | pdb_00001svp

SINDBIS VIRUS CAPSID PROTEIN

1WYK | pdb_00001wyk

SINDBIS VIRUS CAPSID PROTEIN (114-264)

1Z8Y | pdb_00001z8y

Mapping the E2 Glycoprotein of Alphaviruses

2SNV | pdb_00002snv

THE REFINED STRUCTURE OF SINDBIS VIRUS CORE PROTEIN IN COMPARISON WITH OTHER CHYMOTRYPSIN-LIKE SERINE PROTEINASE STRUCTURES

2SNW | pdb_00002snw

SINDBIS VIRUS CAPSID PROTEIN, TYPE3 CRYSTAL FORM

3J0F | pdb_00003j0f

Sindbis virion

3MUU | pdb_00003muu

Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH

3MUW | pdb_00003muw

Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus

4GUA | pdb_00004gua

Alphavirus P23pro-zbd

6IMM | pdb_00006imm

Cryo-EM structure of an alphavirus, Sindbis virus

7VB4 | pdb_00007vb4

A crystal structure of alphavirus nonstructural protein 4 (nsP4) reveals an intrinsically dynamic RNA-dependent RNA polymerase

7VW5 | pdb_00007vw5

Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KXA | pdb_00001kxa

1KXB | pdb_00001kxb

1KXC | pdb_00001kxc

1KXD | pdb_00001kxd

1KXE | pdb_00001kxe

1KXF | pdb_00001kxf

1LD4 | pdb_00001ld4

1SVP | pdb_00001svp

1WYK | pdb_00001wyk

1Z8Y | pdb_00001z8y

2SNV | pdb_00002snv

2SNW | pdb_00002snw

3J0F | pdb_00003j0f

3MUU | pdb_00003muu

3MUW | pdb_00003muw

4GUA | pdb_00004gua

6IMM | pdb_00006imm

7VB4 | pdb_00007vb4

7VW5 | pdb_00007vw5