RCSB PDB: Search

3N6R \| pdb_00003n6r	Download File View File

CRYSTAL STRUCTURE OF the holoenzyme of PROPIONYL-COA CARBOXYLASE (PCC)

Huang, C.S., Sadre-Bazzaz, K., Tong, L.

(2010) Nature 466: 1001-1005

Released	2010-08-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Roseobacter denitrificans OCh 114 Ruegeria pomeroyi
Macromolecule	Propionyl-CoA carboxylase, alpha subunit (protein) Propionyl-CoA carboxylase, beta subunit (protein)
Unique Ligands	BTI

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3TCS \| pdb_00003tcs	Download File View File

Crystal structure of a putative racemase from Roseobacter denitrificans

Eswaramoorthy, S., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Racemase, putative (protein)
Unique Ligands	CL, DAL, GOL, MG, PG4

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4B28 \| pdb_00004b28	Download File View File

Crystal structure of DMSP lyase RdDddP from Roseobacter denitrificans

Hehemann, J.H., Law, A., Redecke, L., Boraston, A.B.

(2014) PLoS One 9: 03128

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	METALLOPEPTIDASE, FAMILY M24, PUTATIVE (protein)
Unique Ligands	FE

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4JXN \| pdb_00004jxn	Download File View File

CRYSTAL STRUCTURE OF POLYPRENYL SYNTHASE ISP_B (TARGET EFI-509198) FROM Roseobacter denitrificans

Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Al Obaidi, N., Stead, M., Love, J., Poulter, C.D., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Octaprenyl-diphosphate synthase (protein)
Unique Ligands	CL, UNL

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4LLS \| pdb_00004lls	Download File View File

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with IPP, GSPP, and calcium bound in active site

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Geranyltranstransferase (protein)
Unique Ligands	CA, GST, IPE

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4LLT \| pdb_00004llt	Download File View File

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with two IPP and calcium bound in active site

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Geranyltranstransferase (protein)
Unique Ligands	CA, IPE

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4OVQ \| pdb_00004ovq	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS, TARGET EFI-510230, WITH BOUND BETA-D-GLUCURONATE

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	TRAP dicarboxylate ABC transporter, substrate-binding protein (protein)
Unique Ligands	BDP, CL

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4PC9 \| pdb_00004pc9	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSENBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND D-MANNONATE

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	C4-dicarboxylate transport system, substrate-binding protein, putative (protein)
Unique Ligands	CS2

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4PCD \| pdb_00004pcd	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND L-GALACTONATE

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-05-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	C4-dicarboxylate transport system, substrate-binding protein, putative (protein)
Unique Ligands	2Q2

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4PF6 \| pdb_00004pf6	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS (RD1_0742, TARGET EFI-510239) WITH BOUND 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID (KDO)

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-05-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	C4-dicarboxylate-binding protein (protein)
Unique Ligands	KDO, PGE, SO4

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4XYD \| pdb_00004xyd	Download File View File

Nitric oxide reductase from Roseobacter denitrificans (RdNOR)

Crow, A.

(2016) Biochemistry 55: 3198-3203

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Roseobacter denitrificans OCh 114
Macromolecule	Nitric-oxide reductase subunit B (protein) NorC-like protein (protein)
Unique Ligands	CA, CU, FE, HEC, HEM, UNL

3N6R | pdb_00003n6r

CRYSTAL STRUCTURE OF the holoenzyme of PROPIONYL-COA CARBOXYLASE (PCC)

3TCS | pdb_00003tcs

Crystal structure of a putative racemase from Roseobacter denitrificans

4B28 | pdb_00004b28

Crystal structure of DMSP lyase RdDddP from Roseobacter denitrificans

4JXN | pdb_00004jxn

CRYSTAL STRUCTURE OF POLYPRENYL SYNTHASE ISP_B (TARGET EFI-509198) FROM Roseobacter denitrificans

4LLS | pdb_00004lls

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with IPP, GSPP, and calcium bound in active site

4LLT | pdb_00004llt

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with two IPP and calcium bound in active site

4OVQ | pdb_00004ovq

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS, TARGET EFI-510230, WITH BOUND BETA-D-GLUCURONATE

4PC9 | pdb_00004pc9

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSENBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND D-MANNONATE

4PCD | pdb_00004pcd

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND L-GALACTONATE

4PF6 | pdb_00004pf6

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS (RD1_0742, TARGET EFI-510239) WITH BOUND 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID (KDO)

4XYD | pdb_00004xyd

Nitric oxide reductase from Roseobacter denitrificans (RdNOR)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3N6R | pdb_00003n6r

3TCS | pdb_00003tcs

4B28 | pdb_00004b28

4JXN | pdb_00004jxn

4LLS | pdb_00004lls

4LLT | pdb_00004llt

4OVQ | pdb_00004ovq

4PC9 | pdb_00004pc9

4PCD | pdb_00004pcd

4PF6 | pdb_00004pf6

4XYD | pdb_00004xyd