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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "vioC"

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Streptomyces vinaceus (8)
	synthetic construct (1)

Taxonomy

	Bacteria (8)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

1.5 - 2.0 (9)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

Oxidoreductases (9)

Symmetry Type

	Cyclic (7)
	Asymmetric (2)

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1 to 9 of 9 Structures

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6ALM \| pdb_00006alm	Download File View File

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and 2-OXO-GLUTARIC ACID

Dunham, N.P., Mitchell, A.J., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	AKG, ARG, FE2

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6ALN \| pdb_00006aln	Download File View File

VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and 2OG

Mitchell, A.J., Dunham, N.P., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	AKG, FE2, ZZU

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6ALO \| pdb_00006alo	Download File View File

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and a peroxysuccinate intermediate

Dunham, N.P., Mitchell, A.J., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	ARG, FE2, OKG

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6ALP \| pdb_00006alp	Download File View File

VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and succinate

Mitchell, A.J., Dunham, N.P., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	FE2, SIN, ZZU

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6ALQ \| pdb_00006alq	Download File View File

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and succinate

Dunham, N.P., Mitchell, A.J., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	ARG, FE2, SIN

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6ALR \| pdb_00006alr	Download File View File

VioC L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate

Mitchell, A.J., Dunham, N.P., Bergman, J.A., Boal, A.K.

(2017) J Am Chem Soc 139: 13830-13836

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	ARG, SIN, VVO

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6Y0N \| pdb_00006y0n	Download File View File

Arginine hydroxylase VioC in complex with Arg, 2OG and Fe under anaerobic environment using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, S.A., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	AKG, ARG, FE

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6Y12 \| pdb_00006y12	Download File View File

Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	FE, SIN, ZZU

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9EQF \| pdb_00009eqf	Download File View File

Crystal structure of the L-arginine hydroxylase VioC MeHis316, bound to Fe(II), L-arginine, and succinate

Hardy, F.J.

(2024) ACS Catal 14: 11584-11590

Released	2024-07-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	synthetic construct
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	ARG, EDO, FE2, PEG, SIN

1 to 9 of 9 Structures

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6ALM | pdb_00006alm

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and 2-OXO-GLUTARIC ACID

6ALN | pdb_00006aln

VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and 2OG

6ALO | pdb_00006alo

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and a peroxysuccinate intermediate

6ALP | pdb_00006alp

VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and succinate

6ALQ | pdb_00006alq

VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and succinate

6ALR | pdb_00006alr

VioC L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate

6Y0N | pdb_00006y0n

Arginine hydroxylase VioC in complex with Arg, 2OG and Fe under anaerobic environment using FT-SSX methods

6Y12 | pdb_00006y12

Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods

9EQF | pdb_00009eqf

Crystal structure of the L-arginine hydroxylase VioC MeHis316, bound to Fe(II), L-arginine, and succinate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6ALM | pdb_00006alm

6ALN | pdb_00006aln

6ALO | pdb_00006alo

6ALP | pdb_00006alp

6ALQ | pdb_00006alq

6ALR | pdb_00006alr

6Y0N | pdb_00006y0n

6Y12 | pdb_00006y12

9EQF | pdb_00009eqf