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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "kbaY"

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Hafnia paralvei (2)
	Yersinia aldovae (2)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (4)

Enzyme Classification Name

Lyases (2)

Symmetry Type

Dihedral (4)

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1 to 4 of 4 Structures

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8Q57 \| pdb_00008q57	Download File View File

Crystal structure of class II SFP aldolase from Yersinia aldovae (YaSqiA-Zn-SO4) with bound sulfate ions

Sharma, M., Davies, G.J.

(2023) J Biological Chem 299: 105338-105338

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Yersinia aldovae
Macromolecule	Tagatose-1,6-bisphosphate aldolase kbaY (protein)
Unique Ligands	BTB, NA, SO4, ZN

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8Q58 \| pdb_00008q58	Download File View File

Crystal structure of metal-dependent classII sulfofructosephosphate aldolase (SFPA) from Hafnia paralvei HpSqiA-Zn

Sharma, M., Davies, G.J.

(2023) J Biological Chem 299: 105338-105338

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hafnia paralvei
Macromolecule	Ketose-bisphosphate aldolase (protein)
Unique Ligands	ZN

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8Q59 \| pdb_00008q59	Download File View File

Crystal structure of metal-dependent class II sulfofructose phosphate aldolase from Yersinia aldovae in complex with sulfofructose phosphate (YaSqiA-Zn-SFP)

Sharma, M., Davies, G.J.

(2023) J Biological Chem 299: 105338-105338

Released	2023-10-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Yersinia aldovae
Macromolecule	Tagatose-1,6-bisphosphate aldolase kbaY (protein)
Unique Ligands	JP9, NA, ZN

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8Q5A \| pdb_00008q5a	Download File View File

Crystal structure of metal-dependent class II sulfofructosephosphate aldolase from Hafnia paralvei HpSqiA-Zn in complex with dihydroxyacetone phosphate (DHAP)

Sharma, M., Davies, G.J.

(2023) J Biological Chem 299: 105338-105338

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Hafnia paralvei
Macromolecule	Ketose-bisphosphate aldolase (protein)
Unique Ligands	13P, ZN

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8Q57 | pdb_00008q57

Crystal structure of class II SFP aldolase from Yersinia aldovae (YaSqiA-Zn-SO4) with bound sulfate ions

8Q58 | pdb_00008q58

Crystal structure of metal-dependent classII sulfofructosephosphate aldolase (SFPA) from Hafnia paralvei HpSqiA-Zn

8Q59 | pdb_00008q59

Crystal structure of metal-dependent class II sulfofructose phosphate aldolase from Yersinia aldovae in complex with sulfofructose phosphate (YaSqiA-Zn-SFP)

8Q5A | pdb_00008q5a

Crystal structure of metal-dependent class II sulfofructosephosphate aldolase from Hafnia paralvei HpSqiA-Zn in complex with dihydroxyacetone phosphate (DHAP)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

8Q57 | pdb_00008q57

Crystal structure of class II SFP aldolase from Yersinia aldovae (YaSqiA-Zn-SO4) with bound sulfate ions

8Q58 | pdb_00008q58

Crystal structure of metal-dependent classII sulfofructosephosphate aldolase (SFPA) from Hafnia paralvei HpSqiA-Zn

8Q59 | pdb_00008q59

Crystal structure of metal-dependent class II sulfofructose phosphate aldolase from Yersinia aldovae in complex with sulfofructose phosphate (YaSqiA-Zn-SFP)

8Q5A | pdb_00008q5a

Crystal structure of metal-dependent class II sulfofructosephosphate aldolase from Hafnia paralvei HpSqiA-Zn in complex with dihydroxyacetone phosphate (DHAP)