RCSB PDB: Search

4Y16 \| pdb_00004y16	Download File View File

Crystal structure of the mCD1d/NC-aGC/iNKTCR ternary complex

Zajonc, D.M., Nemcovic, M.

(2015) J Biological Chem 290: 17206-17217

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain) (protein) Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain) (protein)
Unique Ligands	48G, NAG
Unique branched monosaccharides	FUL, NAG

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4Y2D \| pdb_00004y2d	Download File View File

Crystal structure of the mCD1d/7DW8-5/iNKTCR ternary complex

Zajonc, D.M., Yu, E.D.

To be published

Released	2015-05-27
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain) (protein) Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain) (protein)
Unique Ligands	7DW, FUC, NAG
Unique branched monosaccharides	NAG

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4Y4F \| pdb_00004y4f	Download File View File

Crystal structure of the mCD1d/GCK127/iNKTCR ternary complex

Zajonc, D.M., Yu, E.D.

To be published

Released	2015-05-27
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain/ human constant domain) (protein) Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain) (protein)
Unique Ligands	49M, NAG
Unique branched monosaccharides	NAG

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4Y4H \| pdb_00004y4h	Download File View File

Crystal structure of the mCD1d/GCK152/iNKTCR ternary complex

Zajonc, D.M., Yu, E.D.

To be published

Released	2015-05-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain/ human constant domain) (protein) Chimeric TCR Vbeta8.2 chain (mouse variable domain/ human constant domain) (protein)
Unique Ligands	49X, NAG
Unique branched monosaccharides	NAG

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4Y4K \| pdb_00004y4k	Download File View File

Crystal structure of the mCD1d/EF77/iNKTCR ternary complex

Zajonc, D.M., Birkholz, A.M.

To be published

Released	2015-05-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) chimeric TCR Valpha14Jalpha18 chain (mouse variable, human constant domain) (protein) chimeric TCR Vbeta8.2 chain (mouse variable, human constant domain) (protein)
Unique Ligands	49Y, NAG
Unique branched monosaccharides	FUC, NAG

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4ZAK \| pdb_00004zak	Download File View File

Crystal structure of the mCD1d/DB06-1/iNKTCR ternary complex

Zajonc, D.M., Birkholz, A.M.

(2015) J Immunol 195: 924-933

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.824 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Protein Trav11,Va14Ja18/Vb8.2,Human nkt tcr alpha chain (protein) T cell antigen receptor beta chain 8.2,T-cell receptor beta-2 chain C region,Protein Trbc2,T-cell receptor beta-2 chain C region (protein)
Unique Ligands	4LX, NAG
Unique branched monosaccharides	NAG

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5VCJ \| pdb_00005vcj	Download File View File

Structure of alpha-galactosylphytosphingosine bound by CD1d and in complex with the Va14Vb8.2 TCR

Wang, J., Zajonc, D.M.

(2019) Org Biomol Chem 17: 1225-1237

Released	2018-04-04
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain) (protein) Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain) (protein)
Unique Ligands	N57, NAG, PLM
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6CW6 \| pdb_00006cw6	Download File View File

Structure of alpha-GC[8,18] bound by CD1d and in complex with the Va14Vb8.2 TCR

Wang, J., Zajonc, D.

(2019) J Biological Chem 294: 14345-14356

Released	2019-04-03
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Chimeric T cell antigen receptor alpha chain (protein) Chimeric T cell antigen receptor beta chain Vb8.2 (protein)
Unique Ligands	NAG, PBS, PLM
Unique branched monosaccharides	FUC, NAG

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6MIV \| pdb_00006miv	Download File View File

Crystal structure of the mCD1d/xxq (JJ300)/iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,Tcell receptor chain,T cell receptor beta constant 2 (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN,Human nkt tcr alpha chain (protein)
Unique Ligands	GOL, JU1, NA, NAG
Unique branched monosaccharides	FUC, NAG

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6MIY \| pdb_00006miy	Download File View File

Crystal structure of the mCD1d/xxa (JJ239)/iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN (protein)
Unique Ligands	CL, GOL, JTV, NA
Unique branched monosaccharides	FUC, NAG

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6MJ4 \| pdb_00006mj4	Download File View File

Crystal structure of MCD1D/INKTCR TERNARY COMPLEX bound to glycolipid (XXW)

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, chimeric protein (protein)
Unique Ligands	GOL, JTG, NA, NAG
Unique branched monosaccharides	FUC, NAG

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6MJ6 \| pdb_00006mj6	Download File View File

Crystal structure of the mCD1d/xxx (JJ166) /iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN,Human nkt tcr alpha chain (protein)
Unique Ligands	GOL, JTM, NA, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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6MJA \| pdb_00006mja	Download File View File

Crystal structure of the mCD1d/xxo (JJ294) /iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN (protein)
Unique Ligands	GOL, JTJ, NA, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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6MJI \| pdb_00006mji	Download File View File

Crystal structure of the mCD1d/xxs (JJ304) /iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,Tcell receptor chain,T cell receptor beta constant 2 (protein) T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN (protein)
Unique Ligands	GOL, JTD, NA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6MJJ \| pdb_00006mjj	Download File View File

Crystal structure of the mCD1d/xxm (JJ290) /iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,Tcell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN (protein)
Unique Ligands	GOL, JU4, NA, NAG
Unique branched monosaccharides	FUC, NAG

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6MJQ \| pdb_00006mjq	Download File View File

Crystal structure of the mCD1d/xxp (JJ295) /iNKTCR ternary complex

Zajonc, D.M., Bitra, A., Janssens, J.

(2019) ChemMedChem 14: 147-168

Released	2019-01-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN (protein) T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, chimeric protein (protein)
Unique Ligands	GOL, JUD, NA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7M72 \| pdb_00007m72	Download File View File

MHC-like protein complex structure

Thirunavukkarasu, P., Le Nours, J., Rossjohn, J.

(2021) Nature 600: 302-307

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) NKT Valpha14 (Mouse)-2C12 TCR,Human T-cell receptor sp3.4 alpha chain (protein) NKT Vbeta8.2 (Mouse)-2C12 TCR,Human nkt tcr beta chain (protein)
Unique Ligands	HP6, QOD
Unique branched monosaccharides	BMA, NAG

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8T4Z \| pdb_00008t4z	Download File View File

T-cell receptor and lipid complex structure

Praveena, T., Rossjohn, J.

(2024) Proc Natl Acad Sci U S A 121: e2321686121-e2321686121

Released	2024-08-07
Method	X-RAY DIFFRACTION 2.691 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Antigen-presenting glycoprotein CD1d1 (protein) Beta-2-microglobulin (protein) Beta-chain, T cell receptor beta chain MC.7.G5 chimera (protein) T cell receptor alpha variable 11, Human nkt tcr alpha chain chimera (protein)
Unique Ligands	Y73
Unique branched monosaccharides	BMA, NAG

4Y16 | pdb_00004y16

Crystal structure of the mCD1d/NC-aGC/iNKTCR ternary complex

4Y2D | pdb_00004y2d

Crystal structure of the mCD1d/7DW8-5/iNKTCR ternary complex

4Y4F | pdb_00004y4f

Crystal structure of the mCD1d/GCK127/iNKTCR ternary complex

4Y4H | pdb_00004y4h

Crystal structure of the mCD1d/GCK152/iNKTCR ternary complex

4Y4K | pdb_00004y4k

Crystal structure of the mCD1d/EF77/iNKTCR ternary complex

4ZAK | pdb_00004zak

Crystal structure of the mCD1d/DB06-1/iNKTCR ternary complex

5VCJ | pdb_00005vcj

Structure of alpha-galactosylphytosphingosine bound by CD1d and in complex with the Va14Vb8.2 TCR

6CW6 | pdb_00006cw6

Structure of alpha-GC[8,18] bound by CD1d and in complex with the Va14Vb8.2 TCR

6MIV | pdb_00006miv

Crystal structure of the mCD1d/xxq (JJ300)/iNKTCR ternary complex

6MIY | pdb_00006miy

Crystal structure of the mCD1d/xxa (JJ239)/iNKTCR ternary complex

6MJ4 | pdb_00006mj4

Crystal structure of MCD1D/INKTCR TERNARY COMPLEX bound to glycolipid (XXW)

6MJ6 | pdb_00006mj6

Crystal structure of the mCD1d/xxx (JJ166) /iNKTCR ternary complex

6MJA | pdb_00006mja

Crystal structure of the mCD1d/xxo (JJ294) /iNKTCR ternary complex

6MJI | pdb_00006mji

Crystal structure of the mCD1d/xxs (JJ304) /iNKTCR ternary complex

6MJJ | pdb_00006mjj

Crystal structure of the mCD1d/xxm (JJ290) /iNKTCR ternary complex

6MJQ | pdb_00006mjq

Crystal structure of the mCD1d/xxp (JJ295) /iNKTCR ternary complex

7M72 | pdb_00007m72

MHC-like protein complex structure

8T4Z | pdb_00008t4z

T-cell receptor and lipid complex structure

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

4Y16 | pdb_00004y16

4Y2D | pdb_00004y2d

4Y4F | pdb_00004y4f

4Y4H | pdb_00004y4h

4Y4K | pdb_00004y4k

4ZAK | pdb_00004zak

5VCJ | pdb_00005vcj

6CW6 | pdb_00006cw6

6MIV | pdb_00006miv

6MIY | pdb_00006miy

6MJ4 | pdb_00006mj4

6MJ6 | pdb_00006mj6

6MJA | pdb_00006mja

6MJI | pdb_00006mji

6MJJ | pdb_00006mjj

6MJQ | pdb_00006mjq

7M72 | pdb_00007m72

8T4Z | pdb_00008t4z