RCSB PDB: Search

2LT7 \| pdb_00002lt7	Download File View File

Solution NMR structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA

Buck-Koehntop, B.A., Stanfield, R.L., Ekiert, D.C., Martinez-Yamout, M.A., Dyson, H., Wilson, I.A., Wright, P.E.

(2012) Proc Natl Acad Sci U S A 109: 15229-15234

Released	2012-09-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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3FKC \| pdb_00003fkc	Download File View File

Crystal Structure of Human Zinc finger and BTB domain containing 33

Filippakopoulos, P., Bullock, A., Keates, T., Burgess-Brown, N., Muniz, J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein)

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3M4T \| pdb_00003m4t	Download File View File

Crystal structure of the BTB domain from Kaiso/ZBTB33, form I

Stogios, P.J., Chen, L., Prive, G.G.

To be published

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein)
Unique Ligands	SO4

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3M8V \| pdb_00003m8v	Download File View File

Crystal structure of the BTB domain from Kaiso/ZBTB33, form II

Nielsen, T.K., Stogios, P.J., Prive, G.G.

To be published

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein)

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4F6M \| pdb_00004f6m	Download File View File

Crystal structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA

Buck-Koehntop, B.A., Stanfield, R.L., Ekiert, D.C., Martinez-Yamout, M.A., Dyson, H.J., Wilson, I.A., Wright, P.E.

(2012) Proc Natl Acad Sci U S A 109: 15229-15234

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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4F6N \| pdb_00004f6n	Download File View File

Crystal structure of Kaiso zinc finger DNA binding protein in complex with methylated CpG site DNA

Buck-Koehntop, B.A., Stanfield, R.L., Ekiert, D.C., Martinez-Yamout, M.A., Dyson, H.J., Wilson, I.A., Wright, P.E.

(2012) Proc Natl Acad Sci U S A 109: 15229-15234

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPAPTPAPGPAP(5CM)PGP(5CM)PGPGPTPGPAPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPTPCPAPCP(5CM)PGP(5CM)PGPTPCPTPAPTPAPCPG)-3') (nucleic acid)
Unique Ligands	GOL, ZN

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5VMU \| pdb_00005vmu	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.346 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTP(5CM)PGP(5CM)PGPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCP(5CM)PGP(5CM)PGPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5VMV \| pdb_00005vmv	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.313 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(TPGPCPTPTPCPTP(5CM)PGP(5CM)PGPAPGPAPAPGPCPA)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5VMW \| pdb_00005vmw	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTP(5CM)PGP(5CM)PGPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCP(5CM)PGP(5CM)PGPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5VMX \| pdb_00005vmx	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPCPGPCPGPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCP(5CM)PGP(5CM)PGPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5VMY \| pdb_00005vmy	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPCPGPCPGPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCP(5CM)PGP(5CM)PGPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5VMZ \| pdb_00005vmz	Download File View File

Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

(2018) Biochemistry 57: 2109-2120

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.319 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTP(5CM)PGP(5CM)PGPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCP(5CM)PGP(5CM)PGPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, TLA, ZN

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6DF5 \| pdb_00006df5	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 1.819 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6DF8 \| pdb_00006df8	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 2.536 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6DF9 \| pdb_00006df9	Download File View File

Kaiso (ZBTB33) E535Q zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 2.319 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6DFA \| pdb_00006dfa	Download File View File

Kaiso (ZBTB33) E535A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 1.908 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6DFB \| pdb_00006dfb	Download File View File

Kaiso (ZBTB33) K539A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6DFC \| pdb_00006dfc	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS) with a T-to-U substitution

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry

Released	2019-05-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPAPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPUPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6V8U \| pdb_00006v8u	Download File View File

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a modified Kaiso binding sequence (KBS)

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

(2020) Biochemistry 59: 1909-1926

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.103 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPCPGPAPAPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPTPTPCPGPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	CL, NA, ZN

2LT7 | pdb_00002lt7

Solution NMR structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA

3FKC | pdb_00003fkc

Crystal Structure of Human Zinc finger and BTB domain containing 33

3M4T | pdb_00003m4t

Crystal structure of the BTB domain from Kaiso/ZBTB33, form I

3M8V | pdb_00003m8v

Crystal structure of the BTB domain from Kaiso/ZBTB33, form II

4F6M | pdb_00004f6m

Crystal structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA

4F6N | pdb_00004f6n

Crystal structure of Kaiso zinc finger DNA binding protein in complex with methylated CpG site DNA

5VMU | pdb_00005vmu

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

5VMV | pdb_00005vmv

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site

5VMW | pdb_00005vmw

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

5VMX | pdb_00005vmx

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

5VMY | pdb_00005vmy

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

5VMZ | pdb_00005vmz

Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

6DF5 | pdb_00006df5

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

6DF8 | pdb_00006df8

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5

6DF9 | pdb_00006df9

Kaiso (ZBTB33) E535Q zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

6DFA | pdb_00006dfa

Kaiso (ZBTB33) E535A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

6DFB | pdb_00006dfb

Kaiso (ZBTB33) K539A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

6DFC | pdb_00006dfc

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS) with a T-to-U substitution

6V8U | pdb_00006v8u

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a modified Kaiso binding sequence (KBS)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2LT7 | pdb_00002lt7

3FKC | pdb_00003fkc

3M4T | pdb_00003m4t

3M8V | pdb_00003m8v

4F6M | pdb_00004f6m

4F6N | pdb_00004f6n

5VMU | pdb_00005vmu

5VMV | pdb_00005vmv

5VMW | pdb_00005vmw

5VMX | pdb_00005vmx

5VMY | pdb_00005vmy

5VMZ | pdb_00005vmz

6DF5 | pdb_00006df5

6DF8 | pdb_00006df8

6DF9 | pdb_00006df9

6DFA | pdb_00006dfa

6DFB | pdb_00006dfb

6DFC | pdb_00006dfc

6V8U | pdb_00006v8u