RCSB PDB: Search

4ERN	Download File View File

Crystal structure of the C-terminal domain of human XPB/ERCC-3 excision repair protein at 1.80 A

Hilario, E., Li, Y., Fan, L.

(2013) Acta Crystallogr D Biol Crystallogr 69: 237-246

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	TFIIH basal transcription factor complex helicase XPB subunit (protein)

6RO4	Download File View File

Structure of the core TFIIH-XPA-DNA complex

Kokic, G., Chernev, A., Tegunov, D., Dienemann, C., Urlaub, H., Cramer, P.

(2019) Nat Commun 10: 2885-2885

Released	2019-07-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

7AD8	Download File View File

Core TFIIH-XPA-DNA complex with modelled p62 subunit

Koelmel, W., Kuper, J., Kisker, C.

(2020) Nucleic Acids Res 48: 12689-12696

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

7EGB	Download File View File

TFIID-based holo PIC on SCP promoter

Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.

(2021) Science 372:

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 43 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7EGC	Download File View File

p53-bound TFIID-based holo PIC on HDM2 promoter

Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.

(2021) Science 372:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 43 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7ENA	Download File View File

TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED)

Chen, X., Qi, Y., Wang, X., Wu, Z., Yin, X., Li, J., Liu, W., Xu, Y.

(2021) Science 372:

Released	2021-05-26
Method	ELECTRON MICROSCOPY 4.07 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 68 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7ENC	Download File View File

TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED)

Chen, X., Qi, Y., Wang, X., Wu, Z., Yin, X., Li, J., Liu, W., Xu, Y.

(2021) Science 372:

Released	2021-05-26
Method	ELECTRON MICROSCOPY 4.13 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 68 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVR	Download File View File

Human Mediator with RNA Polymerase II Pre-initiation complex

Rengachari, S., Schilbach, S., Aibara, S., Cramer, P.

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa Trichoplusia ni
Macromolecule	Unique protein chains: 56 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVV	Download File View File

XPB-containing part of TFIIH in a post-translocated state (with ADP-BeF3)

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Human mastadenovirus C
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG

7NVW	Download File View File

TFIIH in a pre-translocated state (without ADP-BeF3)

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Human mastadenovirus C
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

7NVX	Download File View File

TFIIH in a post-translocated state (with ADP-BeF3)

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Human mastadenovirus C
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, SF4, ZN

7NVY	Download File View File

RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVZ	Download File View File

RNA polymerase II pre-initiation complex with closed promoter DNA in distal position

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NW0	Download File View File

RNA polymerase II pre-initiation complex with open promoter DNA

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, SF4, ZN

8BVW	Download File View File

RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)

Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.

(2023) Mol Cell 83: 1798

Released	2023-05-03
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis unidentified adenovirus
Macromolecule	Unique protein chains: 36 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

8BYQ	Download File View File

RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)

Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.

(2023) Mol Cell 83: 1798

Released	2023-05-03
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis unidentified adenovirus
Macromolecule	Unique protein chains: 34 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

8EBS	Download File View File

Initial DNA-lesion (Cy5) binding by XPC and TFIIH

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBU	Download File View File

XPC release from Core7-XPA-DNA (Cy5)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

8EBV	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBW	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex2

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 5.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBX	Download File View File

XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBY	Download File View File

XPC release from Core7-XPA-DNA (AP)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

8GXQ	Download File View File

PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state

Chen, X., Wang, X., Liu, W., Ren, Y., Qu, X., Li, J., Yin, X., Xu, Y.

(2022) Science 378: 62-68

Released	2022-11-02
Method	ELECTRON MICROSCOPY 5.04 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 4
Unique Ligands	MG, SF4, ZN

8GXS	Download File View File

PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state

Chen, X., Wang, X., Liu, W., Ren, Y., Qu, X., Li, J., Yin, X.

(2022) Science 378: 62-68

Released	2022-11-02
Method	ELECTRON MICROSCOPY 4.16 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 4
Unique Ligands	MG, SF4, ZN