RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "Tb427.06.3050"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Geobacillus thermodenitrificans (3)
	Pseudomonas aeruginosa PAO1 (3)
	Bacillus anthracis str. Ames (2)
	Geobacillus thermodenitrificans NG80-2 (2)
	Homo sapiens (2)
	Trypanosoma brucei (2)
	Trypanosoma brucei gambiense (2)
	Burkholderia cenocepacia J2315 (1)
	Pseudomonas aeruginosa (1)
	Saccharolobus solfataricus P2 (1)

More...

Taxonomy

	Bacteria (13)
	Eukaryota (4)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (16)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (11)
	2015 - 2019 (4)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (3)

Symmetry Type

	Cyclic (11)
	Asymmetric (8)

SCOP Classification

Alpha and beta proteins (a/b) (7)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

2IYE	Download File View File

Structure of catalytic CPx-ATPase domain CopB-B

Luebben, M., Gueldenhaupt, J., Deigweiher, K., Haebel, P., Scheidig, A.J.

(2007) J Mol Biol 369: 368

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	COPPER-TRANSPORTING ATPASE (protein)
Unique Ligands	SO4

Explore in 3D

2YNQ	Download File View File

Crystal Structure of Geobacillus thermodenitrificans EssB extracellular fragment

Zoltner, M., Fyfe, P.K., Hunter, W.N.

(2013) Structure 21: 595

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	ESSB (protein)
Unique Ligands	CL, GOL, MLI, NA

Explore in 3D

3ZBH	Download File View File

Geobacillus thermodenitrificans EsxA crystal form I

Ng, W.M., Zoltner, M., Palmer, T., Hunter, W.N.

To be published

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Geobacillus thermodenitrificans
Macromolecule	ESXA (protein)
Unique Ligands	ACT, PO4

Explore in 3D

4ANN	Download File View File

Crystal Structure Staphylococcus aureus ESSB cytoplasmic fragment

Zoltner, M., Fyfe, P.K., Palmer, T., Hunter, W.N.

(2013) Biochem J 449: 469

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	ESSB (protein)

Explore in 3D

4ANO	Download File View File

Crystal Structure Geobacillus thermodenitrificans EssB cytoplasmic fragment

Zoltner, M., Fyfe, P., Hunter, W.N.

(2013) Structure 21: 595

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	ESSB (protein)
Unique Ligands	CL, NA

Explore in 3D

4B7V	Download File View File

Structure of wild type Pseudomonas aeruginosa FabF (KASII)

Lecker, L., Baum, B., Zoltner, M., Hunter, W.N.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 1020

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2 (protein)
Unique Ligands	K

Explore in 3D

4CO9	Download File View File

Crystal structure of kynurenine formamidase from Bacillus anthracis

Diaz-Saez, L., Srikannathasan, V., Zoltner, M., Hunter, W.N.

(2014) Biochem J 462: 581

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus anthracis str. Ames
Macromolecule	KYNURENINE FORMAMIDASE (protein)
Unique Ligands	DIO, GXT, MG, ZN

Explore in 3D

4COB	Download File View File

Crystal structure kynurenine formamidase from Pseudomonas aeruginosa

Diaz-Saez, L., Srikannathasan, V., Zoltner, M., Hunter, W.N.

(2014) Biochem J 462: 581

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	KYNURENINE FORMAMIDASE (protein)
Unique Ligands	ZN

Explore in 3D

4COG	Download File View File

Crystal structure of kynurenine formamidase from Burkholderia cenocepacia

Diaz-Saez, L., Srikannathasan, V., Zoltner, M., Hunter, W.N.

(2014) Biochem J 462: 581

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Burkholderia cenocepacia J2315
Macromolecule	KYNURENINE FORMAMIDASE (protein)
Unique Ligands	CD, EDO, GOL, MG, PEG, ZN

Explore in 3D

4CZ1	Download File View File

Crystal structure of kynurenine formamidase from Bacillus anthracis complexed with 2-aminoacetophenone.

Diaz-Saez, L., Srikannathasan, V., Zoltner, M., Hunter, W.N.

(2014) Biochem J 462: 581

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bacillus anthracis str. Ames
Macromolecule	KYNURENINE FORMAMIDASE (protein)
Unique Ligands	MG, VNJ, ZN

Explore in 3D

4JB6	Download File View File

Structure of Pseudomonas aeruginosa FabF mutant C164Q

Baum, B., Lecker, L.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 1020-1026

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)
Unique Ligands	K

Explore in 3D

4JPF	Download File View File

Structure of wild type Pseudomonas aeruginosa FabF (KASII) in Complex with ligand

Baum, B., Brenk, R., Jaenicke, E.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 1020-1026

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)
Unique Ligands	1LR, K, MG

Explore in 3D

5FV0	Download File View File

The cytoplasmic domain of EssC

Zoltner, M., Ng, W.M.A.V., Palmer, T., Hunter, W.N.

(2016) Biochem J 473: 1941-1952

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Geobacillus thermodenitrificans
Macromolecule	ESX secretion system protein EccC (protein)
Unique Ligands	1PE, ATP, ONA

Explore in 3D

5FWH	Download File View File

N-terminal FHA domain from EssC a component of the bacterial Type VII secretion apparatus

Zoltner, M., Ng, W.M.A.V., Money, J.J., Fyfe, P.K., Kneuper, H., Palmer, T., Hunter, W.N.

(2016) Biochem J 473: 1941

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Geobacillus thermodenitrificans
Macromolecule	ESSC (protein)

Explore in 3D

5MYP	Download File View File

Structure of apo-TbALDH3

Zoltner, M., Zhang, N., Horn, D., Field, M.C.

To be published

Released	2017-04-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma brucei
Macromolecule	Aldehyde dehydrogenase (protein)
Unique Ligands	GOL

Explore in 3D

5NNO	Download File View File

Structure of TbALDH3 complexed with NAD and AN3057 aldehyde

Zoltner, M., Zhang, N., Horn, D., Field, M.C.

(2018) PLoS Pathog 14: e1006850-e1006850

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trypanosoma brucei
Macromolecule	Aldehyde dehydrogenase (protein)
Unique Ligands	92N, NAD

Explore in 3D

7ZGJ	Download File View File

Trypanosoma brucei gambiense ISG65 in complex with human complement component C3

Suelzen, H., Zoll, S.

(2023) Nat Commun 14: 2403-2403

Released	2023-04-05
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Homo sapiens Trypanosoma brucei gambiense
Macromolecule	65 kDa invariant surface glycoprotein, putative (protein) Complement C3 (protein) Complement C3 beta chain (protein)

Explore in 3D

7ZGK	Download File View File

Trypanosoma brucei gambiense ISG65 in complex with human complement component C3b

Suelzen, H., Zoll, S.

(2023) Nat Commun 14: 2403-2403

Released	2023-04-05
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	Homo sapiens Trypanosoma brucei gambiense
Macromolecule	65 kDa invariant surface glycoprotein, putative (protein) Complement C3 beta chain (protein) Complement C3b alpha' chain (protein)

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification