RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "PF3D7_1213600"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Aquifex aeolicus (6)
	Sinorhizobium meliloti (3)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (1)
	2010 - 2014 (3)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (4)

AllSelected

1 to 9 of 9 Structures

Page 1 of 1

Sort by

Explore in 3D

1L5Y \| pdb_00001l5y	Download File View File

CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

Park, S., Meyer, M., Jones, A.D., Yennawar, H.P., Yennawar, N.H., Nixon, B.T.

(2002) FASEB J 16: 1964-1966

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sinorhizobium meliloti
Macromolecule	C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD (protein)
Unique Ligands	BEF, BF2, BF4, GOL, MG, SO4

Explore in 3D

1L5Z \| pdb_00001l5z	Download File View File

CRYSTAL STRUCTURE OF THE E121K SUBSTITUTION OF THE RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

Park, S., Meyer, M., Jones, A.D., Yennawar, H.P., Yennawar, N.H., Nixon, B.T.

(2002) FASEB J 16: 1964-1966

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinorhizobium meliloti
Macromolecule	C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD (protein)
Unique Ligands	GOL, SO4

Explore in 3D

1NY5 \| pdb_00001ny5	Download File View File

Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

Lee, S.Y., de la Torre, A., Kustu, S., Nixon, B.T., Wemmer, D.E.

(2003) Genes Dev 17: 2552-2563

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aquifex aeolicus
Macromolecule	transcriptional regulator (NtrC family) (protein)
Unique Ligands	ADP, GOL, MG, PO4

Explore in 3D

1NY6 \| pdb_00001ny6	Download File View File

Crystal structure of sigm54 activator (AAA+ ATPase) in the active state

Lee, S.Y., de la Torre, A., Kustu, S., Nixon, B.T., Wemmer, D.E.

(2003) Genes Dev 17: 2552-2563

Released	2003-11-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Aquifex aeolicus
Macromolecule	transcriptional regulator (NtrC family) (protein)
Unique Ligands	ADP

Explore in 3D

1QKK \| pdb_00001qkk	Download File View File

Crystal structure of the receiver domain and linker region of DctD from Sinorhizobium meliloti

Meyer, M.G., Park, S., Zeringue, L., Staley, M., Mckinstry, M., Kaufman, R.I., Zhang, H., Yan, D., Yennawar, N., Farber, G.K., Nixon, B.T.

(2001) FASEB J 15: 1326-1328

Released	2000-07-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sinorhizobium meliloti
Macromolecule	C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN (protein)

Explore in 3D

1ZY2 \| pdb_00001zy2	Download File View File

Crystal structure of the phosphorylated receiver domain of the transcription regulator NtrC1 from Aquifex aeolicus

Doucleff, M., Chen, B., Maris, A.E., Wemmer, D.E., Kondrashkina, E., Nixon, B.T.

(2005) J Mol Biology 353: 242-255

Released	2005-08-16
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Aquifex aeolicus
Macromolecule	transcriptional regulator NtrC1 (protein)
Unique Ligands	MG

Explore in 3D

3M0E \| pdb_00003m0e	Download File View File

Crystal structure of the ATP-bound state of Walker B mutant of NtrC1 ATPase domain

Chen, B., Sysoeva, T.A., Chowdhury, S., Rusu, M., Birmanns, S., Guo, L., Hanson, J., Yang, H., Nixon, B.T.

(2010) Structure 18: 1420-1430

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	ATP, MG

Explore in 3D

4LY6 \| pdb_00004ly6	Download File View File

Nucleotide-induced asymmetry within ATPase activator ring drives s54-RNAP interaction and ATP hydrolysis

Sysoeva, T.A., Chowdhury, S., Guo, L., Nixon, B.T.

(2013) Genes Dev 27: 2500-2511

Released	2013-12-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	08T, ADP, MG

Explore in 3D

4LZZ \| pdb_00004lzz	Download File View File

Nucleotide-induced asymmetry within atpase activator ring drives s54-RNAP interaction and ATP hydrolysis

Sysoeva, T.A., Chowdhury, S., Guo, L., Nixon, B.T.

(2013) Genes Dev 27: 2500-2511

Released	2013-12-04
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Aquifex aeolicus
Macromolecule	Transcriptional regulator (NtrC family) (protein)
Unique Ligands	08T, ADP, MG

1 to 9 of 9 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1L5Y | pdb_00001l5y

CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

1L5Z | pdb_00001l5z

CRYSTAL STRUCTURE OF THE E121K SUBSTITUTION OF THE RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

1NY5 | pdb_00001ny5

Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

1NY6 | pdb_00001ny6

Crystal structure of sigm54 activator (AAA+ ATPase) in the active state

1QKK | pdb_00001qkk

Crystal structure of the receiver domain and linker region of DctD from Sinorhizobium meliloti

1ZY2 | pdb_00001zy2

Crystal structure of the phosphorylated receiver domain of the transcription regulator NtrC1 from Aquifex aeolicus

3M0E | pdb_00003m0e

Crystal structure of the ATP-bound state of Walker B mutant of NtrC1 ATPase domain

4LY6 | pdb_00004ly6

Nucleotide-induced asymmetry within ATPase activator ring drives s54-RNAP interaction and ATP hydrolysis

4LZZ | pdb_00004lzz

Nucleotide-induced asymmetry within atpase activator ring drives s54-RNAP interaction and ATP hydrolysis

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1L5Y | pdb_00001l5y

1L5Z | pdb_00001l5z

1NY5 | pdb_00001ny5

1NY6 | pdb_00001ny6

1QKK | pdb_00001qkk

1ZY2 | pdb_00001zy2

3M0E | pdb_00003m0e

4LY6 | pdb_00004ly6

4LZZ | pdb_00004lzz