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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "MMP8"

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

Homo sapiens (11)

Taxonomy

Eukaryota (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (2)

Release Date

	2005 - 2009 (8)
	2010 - 2014 (1)
	2015 - 2019 (2)

Enzyme Classification Name

Hydrolases (11)

Symmetry Type

Asymmetric (11)

SCOP Classification

Alpha and beta proteins (a+b) (11)

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1 to 11 of 11 Structures

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Explore in 3D

1ZP5 \| pdb_00001zp5	Download File View File

Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor

Campestre, C., Agamennone, M., Tortorella, P., Preziuso, S., Biasone, A., Gavuzzo, E., Pochetti, G., Mazza, F., Tschesche, H., Gallina, C.

(2006) Bioorg Med Chem Lett 16: 20-24

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	2NI, CA, ZN

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1ZS0 \| pdb_00001zs0	Download File View File

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (S-enantiomer)

Pochetti, G., Gavuzzo, E., Campestre, C., Agamennone, M., Tortorella, P., Consalvi, V., Gallina, C., Hiller, O., Tschesche, H., Tucker, P.A., Mazza, F.

(2006) J Med Chem 49: 923-931

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, EIN, MES, ZN

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1ZVX \| pdb_00001zvx	Download File View File

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (R-enantiomer)

Pochetti, G., Gavuzzo, E., Campestre, C., Agamennone, M., Tortorella, P., Consalvi, V., Gallina, C., Hiller, O., Tschesche, H., Tucker, P.A., Mazza, F.

(2006) J Med Chem 49: 923-931

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, FIN, ZN

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2OY2 \| pdb_00002oy2	Download File View File

Human MMP-8 in complex with peptide IAG

Calderone, V., Bertini, I., Fragai, M., Luchinat, C., Maletta, M., Yeo, K.J.

(2006) Angew Chem Int Ed Engl 45: 7952-7955

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	ILE-ALA-GLY peptide (protein) Neutrophil collagenase (protein)
Unique Ligands	CA, ZN

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2OY4 \| pdb_00002oy4	Download File View File

Uninhibited human MMP-8

Calderone, V., Bertini, I., Fragai, M., Luchinat, C., Maletta, M., Yeo, K.J.

(2006) Angew Chem Int Ed Engl 45: 7952-7955

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, ZN

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3DNG \| pdb_00003dng	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXA, CA, ZN

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3DPE \| pdb_00003dpe	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, ZN

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3DPF \| pdb_00003dpf	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, HAE, ZN

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3TT4 \| pdb_00003tt4	Download File View File

Human MMP8 in complex with L-glutamate motif inhibitor

Stura, E.A., Dive, V., Devel, L., Czarny, B., Beau, F., Vera, L.

(2012) J Biological Chem 287: 26647-26656

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, E1S, MES, ZN

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4QKZ \| pdb_00004qkz	Download File View File

X-ray structure of the catalytic domain of MMP-8 with the inhibitor ML115

Pochetti, G., Montanari, R., Capelli, D., Tortorella, P.

(2020) Pharmaceuticals (Basel) 13:

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, MES, QZK, ZN

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5H8X \| pdb_00005h8x	Download File View File

Crystal structure of the complex MMP-8/BF471 (catechol inhibitor)

Pochetti, G., Montanari, R., Capelli, D., Tortorella, P.

(2016) J Enzyme Inhib Med Chem 31: 25-37

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	5XT, 7FY, CA, MES, ZN

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ZP5 | pdb_00001zp5

Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor

1ZS0 | pdb_00001zs0

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (S-enantiomer)

1ZVX | pdb_00001zvx

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (R-enantiomer)

2OY2 | pdb_00002oy2

Human MMP-8 in complex with peptide IAG

2OY4 | pdb_00002oy4

Uninhibited human MMP-8

3DNG | pdb_00003dng

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

3DPE | pdb_00003dpe

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

3DPF | pdb_00003dpf

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

3TT4 | pdb_00003tt4

Human MMP8 in complex with L-glutamate motif inhibitor

4QKZ | pdb_00004qkz

X-ray structure of the catalytic domain of MMP-8 with the inhibitor ML115

5H8X | pdb_00005h8x

Crystal structure of the complex MMP-8/BF471 (catechol inhibitor)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZP5 | pdb_00001zp5

1ZS0 | pdb_00001zs0

1ZVX | pdb_00001zvx

2OY2 | pdb_00002oy2

2OY4 | pdb_00002oy4

3DNG | pdb_00003dng

3DPE | pdb_00003dpe

3DPF | pdb_00003dpf

3TT4 | pdb_00003tt4

4QKZ | pdb_00004qkz

5H8X | pdb_00005h8x