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3UG9 \| pdb_00003ug9	Download File View File

Crystal Structure of the Closed State of Channelrhodopsin

Kato, H.E., Ishitani, R., Nureki, O.

(2012) Nature 482: 369-374

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1, Archaeal-type opsin 2 (protein)
Unique Ligands	OLA, RET

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6EID \| pdb_00006eid	Download File View File

Crystal structure of wild-type Channelrhodopsin 2

Borshchevskiy, V., Kovalev, K., Volkov, O., Polovinkin, V., Marin, E., Balandin, T., Astashkin, R., Bamann, C., Bueldt, G., Willlbold, D., Popov, A., Bamberg, E., Gordeliy, V.

(2017) Science 358:

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 2 (protein)
Unique Ligands	EDT, OLC, PO4

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6EIG \| pdb_00006eig	Download File View File

Crystal structure of N24Q/C128T mutant of Channelrhodopsin 2

Kovalev, K., Borshchevskiy, V., Volkov, O., Polovinkin, V., Marin, E., Balandin, T., Astashkin, R., Bamann, C., Bueldt, G., Willlbold, D., Popov, A., Bamberg, E., Gordeliy, V.

(2017) Science 358:

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 2 (protein)
Unique Ligands	LFA, OLC, PO4

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7E6X \| pdb_00007e6x	Download File View File

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 4 ms structure

Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.

(2021) Elife 10:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET
Unique branched monosaccharides	NAG

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7E6Y \| pdb_00007e6y	Download File View File

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure

Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.

(2021) Elife 10:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET
Unique branched monosaccharides	NAG

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7E6Z \| pdb_00007e6z	Download File View File

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 50 microsecond structure

Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.

(2021) Elife 10:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET
Unique branched monosaccharides	NAG

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7E70 \| pdb_00007e70	Download File View File

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 250 microsecond structure

Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.

(2021) Elife 10:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET
Unique branched monosaccharides	NAG

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7E71 \| pdb_00007e71	Download File View File

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 ms structure

Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.

(2021) Elife 10:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET
Unique branched monosaccharides	NAG

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8ZAM \| pdb_00008zam	Download File View File

EndoChR2 channelrhodopsin

Zhang, M.F.

(2024) Nat Commun 15: 7292-7292

Released	2024-09-11
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 2 (protein)
Unique Ligands	L9Q

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8ZAN \| pdb_00008zan	Download File View File

ExoChR2 channelrhodopsin

Zhang, M.F.

(2024) Nat Commun 15: 7292

Released	2024-09-04
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 2 (protein)
Unique Ligands	RET

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9GO1 \| pdb_00009go1	Download File View File

C1C2 Channelrhodopsin - SMX Dark structure

Mulder, M., Weinert, T., Skopintsev, P., Bruenle, S., Broser, M., Hegemann, P., Standfuss, J.

(2025) J Am Chem Soc 147: 1282-1290

Released	2025-01-29
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET

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9GO2 \| pdb_00009go2	Download File View File

C1C2 Channelrhodopsin - SMX Light activated structure

Mulder, M., Weinert, T., Skopintsev, P., Bruenle, S., Broser, M., Hegemann, P., Standfuss, J.

(2025) J Am Chem Soc 147: 1282-1290

Released	2025-01-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Archaeal-type opsin 1,Archaeal-type opsin 2 (protein)
Unique Ligands	OLC, RET

3UG9 | pdb_00003ug9

Crystal Structure of the Closed State of Channelrhodopsin

6EID | pdb_00006eid

Crystal structure of wild-type Channelrhodopsin 2

6EIG | pdb_00006eig

Crystal structure of N24Q/C128T mutant of Channelrhodopsin 2

7E6X | pdb_00007e6x

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 4 ms structure

7E6Y | pdb_00007e6y

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure

7E6Z | pdb_00007e6z

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 50 microsecond structure

7E70 | pdb_00007e70

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 250 microsecond structure

7E71 | pdb_00007e71

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 ms structure

8ZAM | pdb_00008zam

EndoChR2 channelrhodopsin

8ZAN | pdb_00008zan

ExoChR2 channelrhodopsin

9GO1 | pdb_00009go1

C1C2 Channelrhodopsin - SMX Dark structure

9GO2 | pdb_00009go2

C1C2 Channelrhodopsin - SMX Light activated structure

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3UG9 | pdb_00003ug9

6EID | pdb_00006eid

6EIG | pdb_00006eig

7E6X | pdb_00007e6x

7E6Y | pdb_00007e6y

7E6Z | pdb_00007e6z

7E70 | pdb_00007e70

7E71 | pdb_00007e71

8ZAM | pdb_00008zam

8ZAN | pdb_00008zan

9GO1 | pdb_00009go1

9GO2 | pdb_00009go2