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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "EIF4A"

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (11)
	Burkholderia pseudomallei K96243 (2)
	Mus musculus (2)
	synthetic construct (2)
	Encephalomyocarditis virus (1)

Taxonomy

	Eukaryota (13)
	Bacteria (2)
	other sequences (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (13)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	2005 - 2009 (2)
	2015 - 2019 (2)
	2020 - 2024 (8)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (13)
	Lyases (2)

Symmetry Type

Asymmetric (13)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 13 of 13 Structures

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2G9N \| pdb_00002g9n	Download File View File

Structure of the DEAD domain of Human eukaryotic initiation factor 4A, eIF4A

Hogbom, M., Ogg, D., Arrowsmith, C., Berglund, H., Collins, R., Edwards, A., Ehn, M., Flodin, S., Flores, A., Graslund, S., Hallberg, B.M., Hammarstrom, M., Kotenyova, T., Nilsson-Ehle, P., Nordlund, P., Nyman, T., Persson, C., Sagemark, J., Stenmark, P., Sundstrom, M., Thorsell, A.G., Uppenberg, J., Van Den Berg, S., Weigelt, J., Holmberg-Schiavone, L., Structural Genomics Consortium (SGC)

(2010) PLoS One 5: 12791-12791

Released	2006-03-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein)

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2ZU6 \| pdb_00002zu6	Download File View File

crystal structure of the eIF4A-PDCD4 complex

Cho, Y., Chang, J.H., Sohn, S.Y.

(2009) Proc Natl Acad Sci U S A 106: 3148-3153

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein) Programmed cell death protein 4 (protein)
Unique Ligands	ACY, EDO

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5ZBZ \| pdb_00005zbz	Download File View File

Crystal structure of the DEAD domain of Human eIF4A with sanguinarine

Ding, Y., Ding, L.

(2019) Cell Chem Biol 26: 1417-1426.e5

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.30860259206 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein)
Unique Ligands	MLI, SAU

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5ZC9 \| pdb_00005zc9	Download File View File

Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex

Iwasaki, W., Takahashi, M., Sakamoto, A., Iwasaki, S., Ito, T.

(2019) Mol Cell 73: 738

Released	2019-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Eukaryotic initiation factor 4A-I (protein) RNA (5'-R(APGPAPGPAPGPAPGPAPG)-3') (nucleic acid)
Unique Ligands	ANP, MG, RCG

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6XKI \| pdb_00006xki	Download File View File

Crystal structure of eIF4A-I in complex with RNA bound to des-MePateA, a pateamine A analog

Liang, J., Naineni, S.K., Pelletier, J., Nagar, B.

(2021) Cell Chem Biol 28: 825

Released	2021-01-06
Method	X-RAY DIFFRACTION 2.87 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Eukaryotic initiation factor 4A-I (protein) RNA (5'-R(APGPAPGPAPGPAPGPAPG)-3') (nucleic acid)
Unique Ligands	ANP, MG, V6D

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6ZMW \| pdb_00006zmw	Download File View File

Structure of a human 48S translational initiation complex

Brito Querido, J., Sokabe, M., Kraatz, S., Gordiyenko, Y., Skehel, M., Fraser, C., Ramakrishnan, V.

(2020) Science 369: 1220-1227

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 54 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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7DDX \| pdb_00007ddx	Download File View File

Crystal structure of KANK1 S1179F mutant in complex wtih eIF4A1

Pan, W., Xu, Y., Wei, Z.

(2021) J Biological Chem 297: 100958-100958

Released	2021-09-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Eukaryotic initiation factor 4A-I (protein) KN motif and ankyrin repeat domains 1 (protein)
Unique Ligands	GOL, SO4

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7PPZ \| pdb_00007ppz	Download File View File

Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form A

Mobbs, G.W., Aziz, A.A., Dix, S.R., Blackburn, G.M., Sedelnikova, S.E., Minshull, T.C., Dickman, M.J., Baker, P.J., Nathan, S., Firdaus-Raih, M., Rice, D.W.

(2022) Commun Biol 5: 272-272

Released	2022-04-13
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Burkholderia pseudomallei K96243 Homo sapiens
Macromolecule	Burkholderia Lethal Factor 1 (BLF1) (protein) Eukaryotic initiation factor 4A-I (protein)

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7PQ0 \| pdb_00007pq0	Download File View File

Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form B

Mobbs, G.W., Aziz, A.A., Dix, S.R., Blackburn, G.M., Sedelnikova, S.E., Minshull, T.C., Dickman, M.J., Baker, P.J., Nathan, S., Firdaus-Raih, M., Rice, D.W.

(2022) Commun Biol 5: 272-272

Released	2022-04-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Burkholderia pseudomallei K96243 Homo sapiens
Macromolecule	Burkholderia Lethal Factor 1 (BLF1) (protein) Eukaryotic initiation factor 4A-I (protein)

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8HUJ \| pdb_00008huj	Download File View File

Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A

Suzuki, H., Fujiyoshi, Y., Imai, S., Shimada, I.

(2023) Nat Commun 14: 4977-4977

Released	2023-08-02
Method	ELECTRON MICROSCOPY 3.76 Å
Organisms	Encephalomyocarditis virus Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein) Eukaryotic translation initiation factor 4 gamma 1 (protein) IRES RNA (J-K-St) (nucleic acid)
Unique Ligands	MG

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9AVR \| pdb_00009avr	Download File View File

Human eIF4A-1 in complex with AMP-PNP, RNA, and the inhibitor silvestrol

Bhatt, G.B., Naineni, S.K., Cencic, R.C., Jiramongkolsiri, E.J., Huang, S.H., Pelletier, J.P., Nagar, B.N.

To be published

Released	2024-10-23
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein) RNA oligonucleotide (AG)5 (nucleic acid)
Unique Ligands	A1AG8, ANP, IOD, MG

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9BLN \| pdb_00009bln	Download File View File

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Brito Querido, J., Sokabe, M., Diaz-Lopez, I., Gordiyenko, Y., Zuber, P., Yifei, D., Albacete-Albacete, L., Ramakrishnan, V., S Fraser, C.

(2024) Nat Commun 15: 6633-6633

Released	2024-09-04
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 1
Unique Ligands	ACY, K, MG, SPD, ZN

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9DTS \| pdb_00009dts	Download File View File

Crystal structure of the human eIF4A1/AMPPNP/amidino-rocaglate/polypurine RNA complex

Conley, J.F., Allen, K.N.

(2025) ACS Omega 10: 5795-5808

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic initiation factor 4A-I (protein) RNA (5'-R(PAPGPAPGPAPGPAPG)-3') (nucleic acid)
Unique Ligands	A1BB1, ANP, MG

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2G9N | pdb_00002g9n

Structure of the DEAD domain of Human eukaryotic initiation factor 4A, eIF4A

2ZU6 | pdb_00002zu6

crystal structure of the eIF4A-PDCD4 complex

5ZBZ | pdb_00005zbz

Crystal structure of the DEAD domain of Human eIF4A with sanguinarine

5ZC9 | pdb_00005zc9

Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex

6XKI | pdb_00006xki

Crystal structure of eIF4A-I in complex with RNA bound to des-MePateA, a pateamine A analog

6ZMW | pdb_00006zmw

Structure of a human 48S translational initiation complex

7DDX | pdb_00007ddx

Crystal structure of KANK1 S1179F mutant in complex wtih eIF4A1

7PPZ | pdb_00007ppz

Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form A

7PQ0 | pdb_00007pq0

Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form B

8HUJ | pdb_00008huj

Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A

9AVR | pdb_00009avr

Human eIF4A-1 in complex with AMP-PNP, RNA, and the inhibitor silvestrol

9BLN | pdb_00009bln

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

9DTS | pdb_00009dts

Crystal structure of the human eIF4A1/AMPPNP/amidino-rocaglate/polypurine RNA complex

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Structure Determination Methodology

Scientific Name of Source Organism

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Experimental Method

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Enzyme Classification Name

Symmetry Type

SCOP Classification

2G9N | pdb_00002g9n

2ZU6 | pdb_00002zu6

5ZBZ | pdb_00005zbz

5ZC9 | pdb_00005zc9

6XKI | pdb_00006xki

6ZMW | pdb_00006zmw

7DDX | pdb_00007ddx

7PPZ | pdb_00007ppz

7PQ0 | pdb_00007pq0

8HUJ | pdb_00008huj

9AVR | pdb_00009avr

9BLN | pdb_00009bln

9DTS | pdb_00009dts