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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "EEA63_06475"

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (7)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Globitermes brachycerastes (1)
	Paramecium bursaria Chlorella virus 1 (1)
	Trichoderma harzianum (1)

Taxonomy

	Eukaryota (9)
	Riboviria (5)
	Varidnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (5)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (2)
	2020 - 2024 (8)

Enzyme Classification Name

	Oxidoreductases (1)
	Hydrolases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (4)

SCOP Classification

Alpha and beta proteins (a+b) (2)

AllSelected

1 to 11 of 11 Structures

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4HU8 \| pdb_00004hu8	Download File View File

Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut

Han, Q., Liu, N., Robinson, H., Cao, L., Qian, C., Wang, Q., Xie, L., Ding, H., Wang, Q., Huang, Y., Li, J., Zhou, Z.

(2013) Biotechnol Bioeng 110: 3093-3103

Released	2013-09-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Globitermes brachycerastes
Macromolecule	GH10 Xylanase (protein)
Unique Ligands	GOL, SO4

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6UD7 \| pdb_00006ud7	Download File View File

Crystal structure of full-length human DCAF15-DDB1(deltaBPB)-DDA1-RBM39 in complex with indisulam

Bussiere, D.E., Shu, W., Xie, L., Knapp, M.

(2020) Nat Chem Biol 16: 15-23

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DDB1- and CUL4-associated factor 15 (protein) DET1- and DDB1-associated protein 1 (protein) DNA damage-binding protein 1,DNA damage-binding protein 1 (protein) RNA-binding motif protein 39 (protein)
Unique Ligands	EF6, GOL

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6UE5 \| pdb_00006ue5	Download File View File

Crystal structure of full-length human DCAF15-DDB1-deltaPBP-DDA1-RBM39 in complex with 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzenesulfonamide

Knapp, M.S., Shu, W., Xie, L., Bussiere, D.E.

(2020) Nat Chem Biol 16: 15-23

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	DDB1- and CUL4-associated factor 15 (protein) DET1- and DDB1-associated protein 1 (protein) DNA damage-binding protein 1,DNA damage-binding protein 1 (protein) RBM39 (protein)
Unique Ligands	GOL, Q5J

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7CAB \| pdb_00007cab	Download File View File

Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.52 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAC \| pdb_00007cac	Download File View File

SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2021-02-24
Method	ELECTRON MICROSCOPY 3.55 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAH \| pdb_00007cah	Download File View File

The interface of H014 Fab binds to SARS-CoV-2 S

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Rao, Z., wang, Y., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-08-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike protein S1 (protein)

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7CAI \| pdb_00007cai	Download File View File

SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAK \| pdb_00007cak	Download File View File

SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7EGV \| pdb_00007egv	Download File View File

Acetolactate Synthase from Trichoderma harzianum with inhibitor harzianic acid

Zang, X., Xie, L., Chen, M., Tang, Y., Zhou, J.

(2021) J Am Chem Soc

Released	2021-06-30
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Trichoderma harzianum
Macromolecule	Acetolactate synthase (protein)
Unique Ligands	EDO, FAD, J3L, MG, PEG, PO4, SO4, TZD

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8GV3 \| pdb_00008gv3	Download File View File

The cryo-EM structure of GSNOR with NYY001

Xia, Y., Zhang, Q., Yao, D., Zhao, S., Xie, L., Ji, Y., Cao, Y.

To be published

Released	2023-09-20
Method	ELECTRON MICROSCOPY 3.05 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class-3 (protein)
Unique Ligands	NAD, WKZ, ZN

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8H2I \| pdb_00008h2i	Download File View File

Near-atomic structure of five-fold averaged PBCV-1 capsid

Shao, Q., Agarkova, I.V., Noel, E.A., Dunigan, D.D., Liu, Y., Wang, A., Guo, M., Xie, L., Zhao, X., Rossmann, M.G., Van Etten, J.L., Klose, T., Fang, Q.

(2022) Nat Commun 13: 6476-6476

Released	2022-11-16
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Unique protein chains: 26

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4HU8 | pdb_00004hu8

Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut

6UD7 | pdb_00006ud7

Crystal structure of full-length human DCAF15-DDB1(deltaBPB)-DDA1-RBM39 in complex with indisulam

6UE5 | pdb_00006ue5

Crystal structure of full-length human DCAF15-DDB1-deltaPBP-DDA1-RBM39 in complex with 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzenesulfonamide

7CAB | pdb_00007cab

Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody

7CAC | pdb_00007cac

SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.

7CAH | pdb_00007cah

The interface of H014 Fab binds to SARS-CoV-2 S

7CAI | pdb_00007cai

SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab

7CAK | pdb_00007cak

SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab

7EGV | pdb_00007egv

Acetolactate Synthase from Trichoderma harzianum with inhibitor harzianic acid

8GV3 | pdb_00008gv3

The cryo-EM structure of GSNOR with NYY001

8H2I | pdb_00008h2i

Near-atomic structure of five-fold averaged PBCV-1 capsid

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4HU8 | pdb_00004hu8

6UD7 | pdb_00006ud7

6UE5 | pdb_00006ue5

7CAB | pdb_00007cab

7CAC | pdb_00007cac

7CAH | pdb_00007cah

7CAI | pdb_00007cai

7CAK | pdb_00007cak

7EGV | pdb_00007egv

8GV3 | pdb_00008gv3

8H2I | pdb_00008h2i