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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "C6L19_000308"

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (6)
	Saccharomyces cerevisiae (3)
	Saccharomyces cerevisiae S288C (3)

Taxonomy

Eukaryota (12)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (3)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (3)

Symmetry Type

	Asymmetric (12)
	Cyclic (1)

SCOP Classification

All beta proteins (1)

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1 to 12 of 12 Structures

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4N0A \| pdb_00004n0a	Download File View File

Crystal structure of Lsm2-3-Pat1C complex from Saccharomyces cerevisiae

Wu, D.H.

(2014) Cell Res 24: 233-246

Released	2013-12-04
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein) U6 snRNA-associated Sm-like protein LSm2 (protein) U6 snRNA-associated Sm-like protein LSm3 (protein)

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4OGP \| pdb_00004ogp	Download File View File

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P21)

Fourati-Kammoun, Z., Kolesnikova, O., Back, R., Keller, J., Lazar, N., Gaudon-Plesse, C., Seraphin, B., Graille, M.

(2014) PLoS One 9: e96828-e96828

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein)
Unique Ligands	EDO, MES

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4OJJ \| pdb_00004ojj	Download File View File

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P212121)

Fourati-Kammoun, Z., Kolesnikova, O., Back, R., Keller, J., Lazar, N., Gaudon-Plesse, C., Seraphin, B., Graille, M.

(2014) PLoS One 9: e96828-e96828

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein)
Unique Ligands	CL, EDO, MG

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5LM5 \| pdb_00005lm5	Download File View File

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM2 peptide (region 435-451)

Charenton, C., Gaudon-Plesse, C., Fourati, Z., Taverniti, V., Back, R., Kolesnikova, O., Seraphin, B., Graille, M.

(2017) Proc Natl Acad Sci U S A 114: E9493-E9501

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein) mRNA decapping protein 2 (protein)

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5LMF \| pdb_00005lmf	Download File View File

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM3 peptide (region 484-500)

Charenton, C., Gaudon-Plesse, C., Fourati, Z., Taverniti, V., Back, R., Kolesnikova, O., Seraphin, B., Graille, M.

(2017) Proc Natl Acad Sci U S A 114: E9493-E9501

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein) mRNA decapping protein 2 (protein)
Unique Ligands	CL, EDO, MG

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5LMG \| pdb_00005lmg	Download File View File

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM10 peptide (region 954-970)

Charenton, C., Gaudon-Plesse, C., Fourati, Z., Taverniti, V., Back, R., Kolesnikova, O., Seraphin, B., Graille, M.

(2017) Proc Natl Acad Sci U S A 114: E9493-E9501

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2-associated protein PAT1 (protein) mRNA decapping protein 2 (protein)
Unique Ligands	EDO, MG, TRS

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8JAL \| pdb_00008jal	Download File View File

Structure of CRL2APPBP2 bound with RxxGP degron (dimer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Amyloid protein-binding protein 2 (protein) Cullin-2 (protein) Elongin-B (protein) Elongin-C (protein) LEU-THR-ARG-ASN-LYS-GLY-PRO (protein)
Unique Ligands	ZN

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8JAQ \| pdb_00008jaq	Download File View File

Structure of CRL2APPBP2 bound with RxxGP degron (tetramer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

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8JAR \| pdb_00008jar	Download File View File

Structure of CRL2APPBP2 bound with RxxGPAA degron (dimer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Amyloid protein-binding protein 2 (protein) Cullin-2 (protein) Elongin-B (protein) Elongin-C (protein) XP_211896+AA C-degron (protein)
Unique Ligands	ZN

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8JAS \| pdb_00008jas	Download File View File

Structure of CRL2APPBP2 bound with RxxGPAA degron (tetramer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

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8JAU \| pdb_00008jau	Download File View File

Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (dimer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.22 Å
Organisms	Homo sapiens
Macromolecule	Amyloid protein-binding protein 2 (protein) Cullin-2 (protein) Elongin-B (protein) Elongin-C (protein) MRPL28 C-degron (protein)
Unique Ligands	ZN

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8JAV \| pdb_00008jav	Download File View File

Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (tetramer)

Zhao, S., Zhang, K., Xu, C.

(2023) Proc Natl Acad Sci U S A 120: e2308870120-e2308870120

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

1 to 12 of 12 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4N0A | pdb_00004n0a

Crystal structure of Lsm2-3-Pat1C complex from Saccharomyces cerevisiae

4OGP | pdb_00004ogp

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P21)

4OJJ | pdb_00004ojj

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P212121)

5LM5 | pdb_00005lm5

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM2 peptide (region 435-451)

5LMF | pdb_00005lmf

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM3 peptide (region 484-500)

5LMG | pdb_00005lmg

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM10 peptide (region 954-970)

8JAL | pdb_00008jal

Structure of CRL2APPBP2 bound with RxxGP degron (dimer)

8JAQ | pdb_00008jaq

Structure of CRL2APPBP2 bound with RxxGP degron (tetramer)

8JAR | pdb_00008jar

Structure of CRL2APPBP2 bound with RxxGPAA degron (dimer)

8JAS | pdb_00008jas

Structure of CRL2APPBP2 bound with RxxGPAA degron (tetramer)

8JAU | pdb_00008jau

Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (dimer)

8JAV | pdb_00008jav

Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (tetramer)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4N0A | pdb_00004n0a

4OGP | pdb_00004ogp

4OJJ | pdb_00004ojj

5LM5 | pdb_00005lm5

5LMF | pdb_00005lmf

5LMG | pdb_00005lmg

8JAL | pdb_00008jal

8JAQ | pdb_00008jaq

8JAR | pdb_00008jar

8JAS | pdb_00008jas

8JAU | pdb_00008jau

8JAV | pdb_00008jav